Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1124 |
Symbol | trmB |
ID | 4923842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1299395 |
End bp | 1300111 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162659 |
Product | tRNA (guanine-N(7)-)-methyltransferase |
Protein accession | YP_001093254 |
Protein GI | 127512057 |
COG category | [R] General function prediction only |
COG ID | [COG0220] Predicted S-adenosylmethionine-dependent methyltransferase |
TIGRFAM ID | [TIGR00091] tRNA (guanine-N(7)-)-methyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000270248 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGAAG TGACCACCGC AGAGTTTAAC GAAGAGGGTA AATACCTTCG CAAAGTGAGA AGCTTTGTTT TACGTGAAGG ACGTTTGACC AAGGGCCAGG CGCAGGCGAT GGAGCAGCAA TGGCCTGTGA TGGGACTGGA CTACTCGCCC GAGCCTTTGG ATCTGGTCAA GGTGTTTGGC CGGCAGGCCG ATACCGTGCT GGAGATAGGG TTCGGCATGG GCGCCTCACT GGTTGAGATG GCTAAGGCAG CTCCCGAGCT TAACTTTATC GGTATCGAAG TTCACAAGCC TGGCGTGGGT GCTTGTCTTG CTGATGCGGC TGAGGCCGGC GTCACCAACT TGCGTGTGTT CCACCACGAC GCCATCGAGG TGTTGGAAAA CAGCATCCAA AGCGGCAGCC TGGCCAGAGT ACAGCTATTC TTCCCAGATC CTTGGCACAA GAAGCGTCAT CATAAGCGCC GTATCGTTCA GCCGGAATTT GCCGAGCTTA TCCGCCGCTG CCTTAAGATA GGTGGTGTGT TCCACCTGGC GACCGATTGG GAAAACTACA GCGAGCACAT GTTAGAGGTG ATGAGCGCGG CGCCTGGCTA TAAGAACCAG GCGCAGGATG GCGACTTCGT GCCCCGTCCA GATCATCGAC CGCTGACCAA GTTTGAGGCC AGGGGCCATC GTCTGGGACA TGGCGTCTGG GATCTGATGT TCGAGCGTAC CGAGTAA
|
Protein sequence | MSEVTTAEFN EEGKYLRKVR SFVLREGRLT KGQAQAMEQQ WPVMGLDYSP EPLDLVKVFG RQADTVLEIG FGMGASLVEM AKAAPELNFI GIEVHKPGVG ACLADAAEAG VTNLRVFHHD AIEVLENSIQ SGSLARVQLF FPDPWHKKRH HKRRIVQPEF AELIRRCLKI GGVFHLATDW ENYSEHMLEV MSAAPGYKNQ AQDGDFVPRP DHRPLTKFEA RGHRLGHGVW DLMFERTE
|
| |