Gene Shew_1115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1115 
Symbol 
ID4921270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1287898 
End bp1290564 
Gene Length2667 bp 
Protein Length888 aa 
Translation table11 
GC content54% 
IMG OID640162648 
ProductBeta-N-acetylhexosaminidase 
Protein accessionYP_001093245 
Protein GI127512048 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3525] N-acetyl-beta-hexosaminidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0366712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATA AGCTCATTCC AATAACATTA CTCATGAGCC TGGGACTGCT TGGGTGCGGT 
CAGCCAACCA CTAATCAAAT TGCCAAGGAT GAAGGCGCCG CGGCGCAGCA GGTCAGCGAA
AGTTCTGCGC AGCAGGCACT GCATCAGTTT GCTACCAGCC TTGCCGTTAA TTATCACACC
CTGACCAATT ATCCTCAGCA GTGCACCTCA ACAGGTGTCG ATGGCCGCTG CTTCGCCGCC
CAGATAGAAT TAGTCCCGGG TGTCGATTTT GACCGTAAGG ATTGGGCTAT CTACTACAGC
CAGATGCGGC CGGTGAAACA GGTGTTAACC GATGCCTTTG AGCTGACTCA GGTTAAAGGG
GATCTGCATC GCATCACCCC CACGGAAAGA TTTAGCGGTT TTCAGAAAGA TCAGCCAGTC
GACATCGCCT TTCTCGGTGA GTTGTGGCAG CTATCGGAAA CCGATGCCAT GCCCAACTAC
TATATCGTCG TTCCCGGCCT TAAGCCCGAG CTCATCAGCA GTACTCAGCT GACTGTCGAT
GCCAGTACCG GCATGGAGCA GCGGCCCTAT GTCGAGACTT ATGTCAGCGC CGAGAGCCAA
TATAAGCGTA GCGATACCGA TAAGCTTAAG TGGGCGACGC CTCAGGTCTT GTTTGATGCA
AACCAGGATA TCGAGAGTCG CCCAGAGCTT GCCGTTAACG CGATCATCCC AACGCCCAAG
CGACAAATAG TCACTAGTCA AAGCCCAGTG TTATCCCTGG CCTCCGGCTA TCATCTGGAT
GCAGGCAGTG TAGCTAAGGC GTCTGTCGAG GCGGCATTGG CTCGCCTGGC CCACCTTGGC
GTTAAGCCAT CGCCTCAAGG TATCCCACTC AAGTTAGAGC CGTCGACGAC AAAACTTGCC
GAAGGGGGCT ATCGCCTCGA TATTACCTCT GATGGCATCA CCATAGGCGC CAGCGACGAT
GCCGGTTTCT CCTATGGCTT GGCGTCGCTA ACAAGCCTTA TTTCTCTCGA CACCCTATCG
CTCAATGCCA TGATGATTGA AGATGAGCCT AGATATGACT TTCGCGGCAT GCATGTGGAC
GTGGCGCGTA ATTTTCACAG CAAGCAGTTT ATCTTAGATC TGCTGGATCA GATGGCGGCC
TATAAGCTAA ACAAGCTGCA TCTGCATATG GCCGATGATG AGGGCTGGCG CCTAGAGATA
GACGGCCTGC CCGAGCTGAC CCTAGTGGGC AGTCGTCGCT GTCACGACCT GCAGGAAGAT
ACCTGCTTAT TGCCGCAGCT GGGCAGCGGC CCAGATGGCG ATAGTAAGGT CAATGGTTTC
TACTCTAAGG CCGATTATAT CGAGATCCTC AAGTATGCCG GCGCGCGCCA AATTCAGGTG
ATACCGTCCA TGGATATGCC GGGTCACTCG CGCGCCGCCA TCAAGTCGAT GGAGGCCAGA
TATCGCCGTC TGATGGCCGA AGGCAATGAA GCCGCTGCTA ACGAGTATCG TCTCATCGAC
CCGCTGGACA AGACCCGCTA CGCCTCGATC CAATATTACG ACGACAACAC GCTCAACGTC
TGTATGGATT CTAGCTATCA CTTTGTCGAT AAGGTGGTGA GCGAGATATC CAAGCTGCAC
CAGGCTGCGG GTCAGAGCCT GGAGCTTTAC CATATCGGCG CCGATGAAAC CGCCGGTGCC
TGGGTCGACT CTCCCGTCTG TCAGGCGCTG CTTGCAGACA AAGAGAGCGG CCTGGATAGC
GAGGCACATT TTGGGGCTTA CTTTATCGAG CGGGTGGCCA ATATGCTGGC CGATAAAGGG
ATTGAAACAG CGGGCTGGAG CGATGGCATG AGCCATACTC GACCCGAGCG TATGCCGGCA
AATAATCAAA CTAACATCTG GGATGTGGTT GCCCACGGCG GTTATCAGCG CGCCCATGCA
CAGGCCAACT TGGGCTGGGA TACGGTACTG AGTAATCCCG AGGTGCTCTA TTTCGATTTC
CCCTACGAAG CCGATCCTAA AGAGCATGGA TACTACTGGG CGAGTCGCAG CACCAACGAG
CGCAAACTCT TTAGCTTCAT GCCAGATAAC CTACCGGCCA ACGCCGAGCA GTGGACGGAT
ATCGAAGGTA AACCATTTGA AGCCGACGAT ACCCTTAAGC TCGATGATGC GGGCAAACGC
CTCAGCGGGC CGCTAAATCA AGGCGTTAGA TTCAAAGGGA TCCAGGGCCA GCTCTGGAGC
GAGACCATAC GCTCAGATCA AGTGGTGGAA TATATGGTGT TTCCTCGCCT GTTAGTGCTG
GCTGAAAGGG CATGGCACAA GGCCGATTGG GAGGTGCCAT ATCAATATCA GGGGGCTAAA
TATAGCCCAG AGACAAACTA CTTCACGGCC GAGATGCGCG AGAAGCAGCG CGTGCAGTGG
CAGACCTTTG CCAACACCTT AGGCTATAAG GAGCTGGCCA AGCTGGATAG GGCGGGGATA
GCCTACCGTG TGCCGACCCT AGGTGCCAAG ATCAAAGATG GTTATCTGCA AGTGAACAGT
ATCTATCCCG GGCTTGGAAT AGAGTATCGA GTCGATGGCG GCCAGTGGCA GCAATATACA
GAGGCGGTTA GCGTCTCAGG TAGAGTCGAG GTCAGAGGCG TCGCCGCCGA TGGTATCCGC
AAGGGGCGCA TACTCAAGGT CAATTAG
 
Protein sequence
MNNKLIPITL LMSLGLLGCG QPTTNQIAKD EGAAAQQVSE SSAQQALHQF ATSLAVNYHT 
LTNYPQQCTS TGVDGRCFAA QIELVPGVDF DRKDWAIYYS QMRPVKQVLT DAFELTQVKG
DLHRITPTER FSGFQKDQPV DIAFLGELWQ LSETDAMPNY YIVVPGLKPE LISSTQLTVD
ASTGMEQRPY VETYVSAESQ YKRSDTDKLK WATPQVLFDA NQDIESRPEL AVNAIIPTPK
RQIVTSQSPV LSLASGYHLD AGSVAKASVE AALARLAHLG VKPSPQGIPL KLEPSTTKLA
EGGYRLDITS DGITIGASDD AGFSYGLASL TSLISLDTLS LNAMMIEDEP RYDFRGMHVD
VARNFHSKQF ILDLLDQMAA YKLNKLHLHM ADDEGWRLEI DGLPELTLVG SRRCHDLQED
TCLLPQLGSG PDGDSKVNGF YSKADYIEIL KYAGARQIQV IPSMDMPGHS RAAIKSMEAR
YRRLMAEGNE AAANEYRLID PLDKTRYASI QYYDDNTLNV CMDSSYHFVD KVVSEISKLH
QAAGQSLELY HIGADETAGA WVDSPVCQAL LADKESGLDS EAHFGAYFIE RVANMLADKG
IETAGWSDGM SHTRPERMPA NNQTNIWDVV AHGGYQRAHA QANLGWDTVL SNPEVLYFDF
PYEADPKEHG YYWASRSTNE RKLFSFMPDN LPANAEQWTD IEGKPFEADD TLKLDDAGKR
LSGPLNQGVR FKGIQGQLWS ETIRSDQVVE YMVFPRLLVL AERAWHKADW EVPYQYQGAK
YSPETNYFTA EMREKQRVQW QTFANTLGYK ELAKLDRAGI AYRVPTLGAK IKDGYLQVNS
IYPGLGIEYR VDGGQWQQYT EAVSVSGRVE VRGVAADGIR KGRILKVN