Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1115 |
Symbol | |
ID | 4921270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1287898 |
End bp | 1290564 |
Gene Length | 2667 bp |
Protein Length | 888 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162648 |
Product | Beta-N-acetylhexosaminidase |
Protein accession | YP_001093245 |
Protein GI | 127512048 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0366712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAATA AGCTCATTCC AATAACATTA CTCATGAGCC TGGGACTGCT TGGGTGCGGT CAGCCAACCA CTAATCAAAT TGCCAAGGAT GAAGGCGCCG CGGCGCAGCA GGTCAGCGAA AGTTCTGCGC AGCAGGCACT GCATCAGTTT GCTACCAGCC TTGCCGTTAA TTATCACACC CTGACCAATT ATCCTCAGCA GTGCACCTCA ACAGGTGTCG ATGGCCGCTG CTTCGCCGCC CAGATAGAAT TAGTCCCGGG TGTCGATTTT GACCGTAAGG ATTGGGCTAT CTACTACAGC CAGATGCGGC CGGTGAAACA GGTGTTAACC GATGCCTTTG AGCTGACTCA GGTTAAAGGG GATCTGCATC GCATCACCCC CACGGAAAGA TTTAGCGGTT TTCAGAAAGA TCAGCCAGTC GACATCGCCT TTCTCGGTGA GTTGTGGCAG CTATCGGAAA CCGATGCCAT GCCCAACTAC TATATCGTCG TTCCCGGCCT TAAGCCCGAG CTCATCAGCA GTACTCAGCT GACTGTCGAT GCCAGTACCG GCATGGAGCA GCGGCCCTAT GTCGAGACTT ATGTCAGCGC CGAGAGCCAA TATAAGCGTA GCGATACCGA TAAGCTTAAG TGGGCGACGC CTCAGGTCTT GTTTGATGCA AACCAGGATA TCGAGAGTCG CCCAGAGCTT GCCGTTAACG CGATCATCCC AACGCCCAAG CGACAAATAG TCACTAGTCA AAGCCCAGTG TTATCCCTGG CCTCCGGCTA TCATCTGGAT GCAGGCAGTG TAGCTAAGGC GTCTGTCGAG GCGGCATTGG CTCGCCTGGC CCACCTTGGC GTTAAGCCAT CGCCTCAAGG TATCCCACTC AAGTTAGAGC CGTCGACGAC AAAACTTGCC GAAGGGGGCT ATCGCCTCGA TATTACCTCT GATGGCATCA CCATAGGCGC CAGCGACGAT GCCGGTTTCT CCTATGGCTT GGCGTCGCTA ACAAGCCTTA TTTCTCTCGA CACCCTATCG CTCAATGCCA TGATGATTGA AGATGAGCCT AGATATGACT TTCGCGGCAT GCATGTGGAC GTGGCGCGTA ATTTTCACAG CAAGCAGTTT ATCTTAGATC TGCTGGATCA GATGGCGGCC TATAAGCTAA ACAAGCTGCA TCTGCATATG GCCGATGATG AGGGCTGGCG CCTAGAGATA GACGGCCTGC CCGAGCTGAC CCTAGTGGGC AGTCGTCGCT GTCACGACCT GCAGGAAGAT ACCTGCTTAT TGCCGCAGCT GGGCAGCGGC CCAGATGGCG ATAGTAAGGT CAATGGTTTC TACTCTAAGG CCGATTATAT CGAGATCCTC AAGTATGCCG GCGCGCGCCA AATTCAGGTG ATACCGTCCA TGGATATGCC GGGTCACTCG CGCGCCGCCA TCAAGTCGAT GGAGGCCAGA TATCGCCGTC TGATGGCCGA AGGCAATGAA GCCGCTGCTA ACGAGTATCG TCTCATCGAC CCGCTGGACA AGACCCGCTA CGCCTCGATC CAATATTACG ACGACAACAC GCTCAACGTC TGTATGGATT CTAGCTATCA CTTTGTCGAT AAGGTGGTGA GCGAGATATC CAAGCTGCAC CAGGCTGCGG GTCAGAGCCT GGAGCTTTAC CATATCGGCG CCGATGAAAC CGCCGGTGCC TGGGTCGACT CTCCCGTCTG TCAGGCGCTG CTTGCAGACA AAGAGAGCGG CCTGGATAGC GAGGCACATT TTGGGGCTTA CTTTATCGAG CGGGTGGCCA ATATGCTGGC CGATAAAGGG ATTGAAACAG CGGGCTGGAG CGATGGCATG AGCCATACTC GACCCGAGCG TATGCCGGCA AATAATCAAA CTAACATCTG GGATGTGGTT GCCCACGGCG GTTATCAGCG CGCCCATGCA CAGGCCAACT TGGGCTGGGA TACGGTACTG AGTAATCCCG AGGTGCTCTA TTTCGATTTC CCCTACGAAG CCGATCCTAA AGAGCATGGA TACTACTGGG CGAGTCGCAG CACCAACGAG CGCAAACTCT TTAGCTTCAT GCCAGATAAC CTACCGGCCA ACGCCGAGCA GTGGACGGAT ATCGAAGGTA AACCATTTGA AGCCGACGAT ACCCTTAAGC TCGATGATGC GGGCAAACGC CTCAGCGGGC CGCTAAATCA AGGCGTTAGA TTCAAAGGGA TCCAGGGCCA GCTCTGGAGC GAGACCATAC GCTCAGATCA AGTGGTGGAA TATATGGTGT TTCCTCGCCT GTTAGTGCTG GCTGAAAGGG CATGGCACAA GGCCGATTGG GAGGTGCCAT ATCAATATCA GGGGGCTAAA TATAGCCCAG AGACAAACTA CTTCACGGCC GAGATGCGCG AGAAGCAGCG CGTGCAGTGG CAGACCTTTG CCAACACCTT AGGCTATAAG GAGCTGGCCA AGCTGGATAG GGCGGGGATA GCCTACCGTG TGCCGACCCT AGGTGCCAAG ATCAAAGATG GTTATCTGCA AGTGAACAGT ATCTATCCCG GGCTTGGAAT AGAGTATCGA GTCGATGGCG GCCAGTGGCA GCAATATACA GAGGCGGTTA GCGTCTCAGG TAGAGTCGAG GTCAGAGGCG TCGCCGCCGA TGGTATCCGC AAGGGGCGCA TACTCAAGGT CAATTAG
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Protein sequence | MNNKLIPITL LMSLGLLGCG QPTTNQIAKD EGAAAQQVSE SSAQQALHQF ATSLAVNYHT LTNYPQQCTS TGVDGRCFAA QIELVPGVDF DRKDWAIYYS QMRPVKQVLT DAFELTQVKG DLHRITPTER FSGFQKDQPV DIAFLGELWQ LSETDAMPNY YIVVPGLKPE LISSTQLTVD ASTGMEQRPY VETYVSAESQ YKRSDTDKLK WATPQVLFDA NQDIESRPEL AVNAIIPTPK RQIVTSQSPV LSLASGYHLD AGSVAKASVE AALARLAHLG VKPSPQGIPL KLEPSTTKLA EGGYRLDITS DGITIGASDD AGFSYGLASL TSLISLDTLS LNAMMIEDEP RYDFRGMHVD VARNFHSKQF ILDLLDQMAA YKLNKLHLHM ADDEGWRLEI DGLPELTLVG SRRCHDLQED TCLLPQLGSG PDGDSKVNGF YSKADYIEIL KYAGARQIQV IPSMDMPGHS RAAIKSMEAR YRRLMAEGNE AAANEYRLID PLDKTRYASI QYYDDNTLNV CMDSSYHFVD KVVSEISKLH QAAGQSLELY HIGADETAGA WVDSPVCQAL LADKESGLDS EAHFGAYFIE RVANMLADKG IETAGWSDGM SHTRPERMPA NNQTNIWDVV AHGGYQRAHA QANLGWDTVL SNPEVLYFDF PYEADPKEHG YYWASRSTNE RKLFSFMPDN LPANAEQWTD IEGKPFEADD TLKLDDAGKR LSGPLNQGVR FKGIQGQLWS ETIRSDQVVE YMVFPRLLVL AERAWHKADW EVPYQYQGAK YSPETNYFTA EMREKQRVQW QTFANTLGYK ELAKLDRAGI AYRVPTLGAK IKDGYLQVNS IYPGLGIEYR VDGGQWQQYT EAVSVSGRVE VRGVAADGIR KGRILKVN
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