| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1109 |
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| Symbol | |
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| ID | 4922145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1278887 |
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| End bp | 1279399 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640162642 |
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| Product | type IV pilus biogenesis protein, putative |
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| Protein accession | YP_001093239 |
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| Protein GI | 127512042 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.014946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC ATAATGGATT TACACTCATA GAATTAATGG TCACACTCGC CGTTGCGACC
ATACTCCTCT CGGTTGGCCT ACCAAGTCTT ACAGATCTCT ATCAGGCTTA CCGAGCCGAC
GCCGCGATAA AGATGATTCA ACAGACTCTT CAGTTCGCCA GAAATACTGC CATCAACTAC
GGGCTTAGGG TAACGGTTTG CCCAATAAAA GATAACCAAT GTACCAATGA CTGGCACCTA
GGCTTGGGGG TATTTACCGA CTCGGGGACC AGCAACCAGC TCGATGGCAC AGACAAATTG
TTGATGCAAA CAAGTTCATT TGATAGTGGT GACTTTGTCT ACTACAACCG CGCGTCTGCT
CGTTTTCAAC CTGATGGGCT CGCATCAGGC AGCAACGGAA CCTTAAGGTA CTGCCCTGGC
TCGGCCAACA GCCCTTATTC CAAAGCCGTT ATCGTCAATC AAGCCGGTAG AATACGCTTT
TCAAAAGAGA AAAATATCAG CTGCAACCAA TAA
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| Protein sequence | MKHHNGFTLI ELMVTLAVAT ILLSVGLPSL TDLYQAYRAD AAIKMIQQTL QFARNTAINY
GLRVTVCPIK DNQCTNDWHL GLGVFTDSGT SNQLDGTDKL LMQTSSFDSG DFVYYNRASA
RFQPDGLASG SNGTLRYCPG SANSPYSKAV IVNQAGRIRF SKEKNISCNQ
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