| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1108 |
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| Symbol | |
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| ID | 4924356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1278259 |
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| End bp | 1278750 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640162641 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001093238 |
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| Protein GI | 127512041 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.105316 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAGA ATAAAAATGG GTTCACACTC GTTGAACTCA TGGTAACTAT TGTCGTTGCA
GGAATCATAT TAACCATAGG GCTCCCATCT TTAATTTCGG CCTATGAAAG CGTCAGAGTA
AATCGCAGTA TTGAGCGTAT CCATAACTTA ATGTCTTTTG CCAGAAATCA GGCAATAAGT
TACGGCGCGA CAGTCAATGT CTGCCCTTTT GCCTCAGCAA CCTCTTGTGG AACAGGGACA
AATTGGAAGG GAGGAATTAG AGTCTATCTA ACCGATGCGG GGGGAACAGA CAAAGAACTA
AGAGCAATAG ATGGTTTTGA CACTAATGAT TCTGTCAAAG GTTCCGGCCC ATTGATTACC
TTTAGCGCAG ATGGTTTATC TTCCAGCGGT TCTATTATCT ATTGCCCAAA TGGCAAGGCA
AGCGAATCTC AAAGTGTAAC AATAAGTAGC AGTGGCCTCA TCTCTTATGG TGCCGATGGA
AATAGCTGCT AA
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| Protein sequence | MMKNKNGFTL VELMVTIVVA GIILTIGLPS LISAYESVRV NRSIERIHNL MSFARNQAIS
YGATVNVCPF ASATSCGTGT NWKGGIRVYL TDAGGTDKEL RAIDGFDTND SVKGSGPLIT
FSADGLSSSG SIIYCPNGKA SESQSVTISS SGLISYGADG NSC
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