| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1107 |
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| Symbol | |
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| ID | 4924361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1277531 |
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| End bp | 1277923 |
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| Gene Length | 393 bp |
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| Protein Length | 130 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640162640 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001093237 |
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| Protein GI | 127512040 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.963603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGAAGT TAAAGGGCTT TACCTTAATA GAGGTGATGA TCACCGTTGC TATAGTGGGA
ATATTAGCTG CAATTGCATA TCCTTCCTAC ATTGATTATG TGACTAAAAG TGGACGAGCT
GAGGGCGTGG CTGCGGTGAT GGAGGTTGCA AACCTTCAAG AGCAGTACTA TTTGGATAAT
AGAACTTATG CCAGTGATCT AACCAAGTTA GGGATGAGCG CAAATCCTTT CGTTACTGAG
CATGAGCATT ATAAAGTGGC CTCTACTGGA GGAGCTACAT TTAAGGTAAC CGCCACGGCT
ATTGGCTCTC AGGCTAGCCG GGATACGGCT TGTGCAACTA TCACCATGAC GGATGCAGGT
GTTAAAGGTC CGTCAAAGGA GTGTTGGAAA TGA
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| Protein sequence | MQKLKGFTLI EVMITVAIVG ILAAIAYPSY IDYVTKSGRA EGVAAVMEVA NLQEQYYLDN
RTYASDLTKL GMSANPFVTE HEHYKVASTG GATFKVTATA IGSQASRDTA CATITMTDAG
VKGPSKECWK
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