| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1106 |
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| Symbol | |
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| ID | 4922452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1273979 |
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| End bp | 1277527 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640162639 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_001093236 |
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| Protein GI | 127512039 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.332365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAGA AATTACTATG CAGCACAGTT ATGGCTTTGG TCGTAGTTTC TGGAATGACT
ATAGCTGATG ATACAGAACT CTATTTGATT GACTCGAATG TGCGCTCGGG AAAAAGGCCC
CAAGTTTTAT TTGTATTTGA TAATTCAGGA AGTATGTCAA CTGAGGACCA GAATGCGACT
AGTTCCTACT GTTCAGCTGA TGATAAAGCA AATGGTATTT GTGATTATGC CGATGGTTTC
GGTGATTATT TAGCTGGCTA TTCTGGTTAT ATAAACGAGA AAGGAATTTA TTGGAATGCT
GGCGGAATAG ATAATACCAG TAACATGCCT ACTCCCGATG AGCCGAAAGA TTCGCGACGC
TTTTATGCCG CTAATAATAA CTGTCATAAA GCTGCTATTG CATTGCAAGA AAGAGGACGC
TATACGGGAT ATTTACGAGA ATTTAAGTCC AGTGGCAATA CGGGGAAATG GTATCCCTTG
GCAGATAACG AAGGGTTTAA TCGTGGGCAA GTTGTTGATT GTCACCAAGA TATTCTGGAT
AGTGATCCAG AGAATCCAGG GTTGGAAAAG GTAGGAGGAA GCTCTGTACC ATTTGATCCT
GGTTACCCTA TAGATTCAAA GAAAATGTAC ACCGACTCAA CAGATTCAAG CGCTCGTGAT
TATAGCCTTG AAAACACAGA GTTTGGTAAA GGTACACCAG TGACCCTTTA TACAGCACAC
TACCTAGTTT GGTATCAGTG GGTTACTACC ACAGAGGAAG GGCAAAATAG TGGTGGGACA
GGTACTCGTT TAGAAGTTGC AAAAGATGCA TTGACAACAG CCTTGACGTC ATTATCTATT
CCAATCGATG CTGGGTTAGC TGTATTTAAC TTGAATTATC CAGATGAAGG CGACGCAGAT
GGCGGGCGTA TTGTTTATGA CATTAAGGAG ATGACCTCTA CAAATCAGAA TTCTTTGATT
TCTTTGATTA ATGGTATGCC AGCTCAAACT AACACCCCTT TATGTGAGAC TCTTTATGAG
GCTTACCAGT ACTTTAGCGG CGGGCCTGTT ACCTTTGGTA ATGACGATAA GAATGCTCAG
GGTAGTTATA AAATCGATGG TTATATTCCT AACTCTCCTC CAAGTATTCT TACTGGCGGG
AATTATACTA CGCCATTTAA AAAATGCCCT GATACGGCCT ATATTATTTA TATTACTGAT
GGCGCACCGA CAATAGATAG TAATGCAGAT AGTGCGATCA TCTCTTTAGC CAGCTCAGCT
GAGAATACTG CAAACTATTC AGGATTTGAC TTTGTCAATT CTTGGGGGGA TACGGAAACT
AGTTATCTGC CAGCCTTAGC TGCTTATATG TATAACAATG ATATGGTTAA GGGAGTCAAA
GATGCTAATG GCATTGATAA TAAACAGAAT GTTAGATTAT TTACGATAGG TTTTTCCGAA
GGAGCTGACG TTGCGGCCAA GTTATTGGAA GAGGCTGCTT TTAGAGGTGG AAACCCTAGA
GATGATTCGG GTGTATCTAA AGGTTATTAC GTTGCTAAGA ATGGTCTTGA TCTGGTGGCG
GCAATGGATG ATGCCTTAAA GTCTATTTTA TCAATTGACT CATCATTTAC CTCTCCAAGT
ATTGCCAGTA ATAATTTCGA TAAAACACAG ACTTATAATT CAGCTTACTT TGCAATGTTC
TTACCCGGTA AGGGGCCTAG ATGGAGTGGA AATCTTAAGA AGTTAAAGGT CAATTCTTCA
GGAGAGATTG TTGGTCCAGG AGGAAGTTCC AAGGCAATTG ATTCTAATGG TAATATTGCC
GCTTCTACCT GTACCTATTG GAATACATGT CCTGCTAATA ATATCGATGG TAATAAGGTT
AACTCTGGAG GGGTACTGCC CATTTTAAGA TCAACATTAA AAAGTCGAAA CATTAGGACG
AATGTCGGTA CTAGTATTGT GGGCATTCAA TTCTCAGGTT TCGCGTCAGC CTATTCTCAA
GAGGATTTAG ATTGGTTGTA TGGTGTTGAT GTCGATGATG ATGATAACGA TGGTAATATA
TATGATGCCA GAGAAGATAT TATGGGCGAT CCTCTGCATT CAAAACCCCT GGCTATTAAC
TTTGGTGAGA AACCTAATGC GGATGGAACA GAAAATCTAG ATGTTAGAGT TATAGTGGGA
ACTAATCAGG GGTTAGTTCA CATGTTTAAA GATTCCGATT CTGGAAGTAA TGATTATTCA
GTTGGTTCTG TAACGGAAAC CTGGGCATTT ATTCCTCAGG AGTTGTGGCA TAACGTTCCT
ACGCTTAGAA AGAATTATTC TACTGGAAGC CATAGCGTGT ATGGTATGGA TTTGTCGCCA
GTTGCCTATA CGGAAACGGA TTCTAGTGGG AAAGTCAATA AGGCTTGGGT GTTCCTTGGT
ATGCGAAGAG GTGGTACTTC CTATTATGCC TTGGATATCA CTAATCCGGA CGCACCAAGT
TTTAAATGGA AAATAGATTC AAATTCGACT GGATTTGAAG AGCTGGGGCA GTCTTGGTCA
GAGCCTGTTG TCACCTTTGT ACCAGGTATT GATGATCCTG TGTTAGTTAT TGGTGGTGGC
ATGGCCTCAA GTGAAGGTAC TGGAGAGGCG GTTTATATTG TTAATGCTAA ATCAGGTGCA
TTTATCAAGA AGTTTTCAGC GACAGGTATG GCAAGTGTGC CTAATAAAGT TGCCGTTTTA
GACAGCAATA ATGATGGTAT AACCGATAGA ATCTATGCTG CGGATATTGG GGGGAATATT
TGGCGAATGG ATATGCCAGA ATCGACTCAA TCGACTTGGT CTACGTTCAA GTTTGCGTCT
ATTGCGACAT CTACTTCTCC AAATGACAGG ATGTTTTTTG CAGAGCCATC AGTAGCACAG
ACTCAATTTA ATAATATTCA TGACAATAGT GGTGAACTTA CCTATCAGAG TGTTCCATAT
GACGCTGTCA CTATAGGTAC AGGAAATCGA ACTCACCCTC TTGATATAAA TACGAATGAC
ATGTTTTATG TTTTTCAAGA TCGTAATGTG GTAACTAAAA CCTTTACGAG TACCGATGCA
CCAGCTGCGT TAACCATTAG TGAATTGTAT GATGTCACCA CAGCTGCGCC ATCATCTCAG
AGTGATAATG TTACTTTTGG AACCAAACGT GGTTGGTTTT ACGACTATAG TGTTGCTGGA
GAAAAGACTT TATCAGCGTC ACTGATATTT GACGGAAAAG TTTATTTTAC TTCATTTATT
CCTCCGACTC GAACAGATGT CGATTTGGAT GCCGGAATAT GTGGCTTCGC AGGACAGGGA
CGTTTATACG TATTTGACCT GCATAAGGGA ACCAGATCTT ACAGCGAAAC CTACTATGAA
ATTGGTGAAA GGGTACCAGA TACGCCACAG ATTGTAATAC CTAAACCTGA AGAGGGTGAA
GATTCTACTG CCTATATCAT TGGTGTGGGC AAAGGCGAGT GTGAAGATGG AGAGTGTAAA
GGCACTGTGT CTTTAGGCAG TGGTTTAAGT ACCAATAGAA TTTATTATCA TTTGGATGAG
AAGAATTAA
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| Protein sequence | MFKKLLCSTV MALVVVSGMT IADDTELYLI DSNVRSGKRP QVLFVFDNSG SMSTEDQNAT
SSYCSADDKA NGICDYADGF GDYLAGYSGY INEKGIYWNA GGIDNTSNMP TPDEPKDSRR
FYAANNNCHK AAIALQERGR YTGYLREFKS SGNTGKWYPL ADNEGFNRGQ VVDCHQDILD
SDPENPGLEK VGGSSVPFDP GYPIDSKKMY TDSTDSSARD YSLENTEFGK GTPVTLYTAH
YLVWYQWVTT TEEGQNSGGT GTRLEVAKDA LTTALTSLSI PIDAGLAVFN LNYPDEGDAD
GGRIVYDIKE MTSTNQNSLI SLINGMPAQT NTPLCETLYE AYQYFSGGPV TFGNDDKNAQ
GSYKIDGYIP NSPPSILTGG NYTTPFKKCP DTAYIIYITD GAPTIDSNAD SAIISLASSA
ENTANYSGFD FVNSWGDTET SYLPALAAYM YNNDMVKGVK DANGIDNKQN VRLFTIGFSE
GADVAAKLLE EAAFRGGNPR DDSGVSKGYY VAKNGLDLVA AMDDALKSIL SIDSSFTSPS
IASNNFDKTQ TYNSAYFAMF LPGKGPRWSG NLKKLKVNSS GEIVGPGGSS KAIDSNGNIA
ASTCTYWNTC PANNIDGNKV NSGGVLPILR STLKSRNIRT NVGTSIVGIQ FSGFASAYSQ
EDLDWLYGVD VDDDDNDGNI YDAREDIMGD PLHSKPLAIN FGEKPNADGT ENLDVRVIVG
TNQGLVHMFK DSDSGSNDYS VGSVTETWAF IPQELWHNVP TLRKNYSTGS HSVYGMDLSP
VAYTETDSSG KVNKAWVFLG MRRGGTSYYA LDITNPDAPS FKWKIDSNST GFEELGQSWS
EPVVTFVPGI DDPVLVIGGG MASSEGTGEA VYIVNAKSGA FIKKFSATGM ASVPNKVAVL
DSNNDGITDR IYAADIGGNI WRMDMPESTQ STWSTFKFAS IATSTSPNDR MFFAEPSVAQ
TQFNNIHDNS GELTYQSVPY DAVTIGTGNR THPLDINTND MFYVFQDRNV VTKTFTSTDA
PAALTISELY DVTTAAPSSQ SDNVTFGTKR GWFYDYSVAG EKTLSASLIF DGKVYFTSFI
PPTRTDVDLD AGICGFAGQG RLYVFDLHKG TRSYSETYYE IGERVPDTPQ IVIPKPEEGE
DSTAYIIGVG KGECEDGECK GTVSLGSGLS TNRIYYHLDE KN
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