| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1104 |
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| Symbol | |
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| ID | 4922768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1272548 |
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| End bp | 1273534 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640162637 |
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| Product | prepilin-type cleavage/methylation-like protein |
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| Protein accession | YP_001093234 |
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| Protein GI | 127512037 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGG CTTTGAAAAT AAAAAATAAG CAAAAGGGCC TGTCACTTGT AGAAATGATG
GTAGCTCTAG TTATAAGTCT GTTTTTATCG GCTGGGCTTT TTACCATGTT TAGTATGTCG
TCTTCGAATG TAACGACTAC GAGCCAGTTT AATCAATTGC AAGAAAATGG ACGGATAGCG
CTTGCCATAA TGGAGCGAGA TATCTCTCAG CTTGGATTTA TGGGGGATAT TACGGGGACG
GATTTTGTTG TTGGGACAAA CACTGTACTT GAAGTGCCCA CATCAGGTTT CATTGATTGT
GTTGGCGCTG GATTAAATAA TGCGACGCTT CCTAATACGC AACCTGCTCA TTTCAGGCGG
TTGTGGGGAT ACGAAAGTGG CGTTGGAGGT AGCTCTTTAA GCTGCTTGGC TGGTGTAACG
GTTAATAAAA ATACCGATGT ATTACAGATG AAACGCTTTA TTGGGCCCAA TGTAGCAAAT
GGTAATAGTG ATGCCATATT TGCTGCTACG AACTCTAGTG AAGTTGCATT TTTCGTCGGT
GCTAACCCAG TAGCAGCCCT AACCAATCCA AGGATCTGGG AATATCAGCA TCATGTTTAC
TATATTGCAG ATGATGCAGC AGGTACTCCA GTATTACGAC GAATTACTCT AACAAATAAG
GGAATGAATA ACTTTGAGCA ATTAGTGGAA GGAATAGAAA ATGTTCGTTT CCTTTATGGA
TTTGATAATG ATGGCGATAG CACGCCAGAT CGCTACATTC CCGAATCCCA AGTGACCTCG
CTAATGTGGG ATAACGAATC ATTTCAGCGT TTGGTTGCGA TAAAAGTTTT TGTTTTGGTT
CGTTCTGTCC AGAATGACCC ATCATATACG AATGAGACCA CTTATCAATT GGGTGATAAG
CAGATACAGC CTATCAAAGA TAATTTTAGA CGTAAGGTTA TGTCGACAAC GGTGGTATTG
GAAAACCCAG TACTAATAAG GAGCTAA
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| Protein sequence | MNMALKIKNK QKGLSLVEMM VALVISLFLS AGLFTMFSMS SSNVTTTSQF NQLQENGRIA
LAIMERDISQ LGFMGDITGT DFVVGTNTVL EVPTSGFIDC VGAGLNNATL PNTQPAHFRR
LWGYESGVGG SSLSCLAGVT VNKNTDVLQM KRFIGPNVAN GNSDAIFAAT NSSEVAFFVG
ANPVAALTNP RIWEYQHHVY YIADDAAGTP VLRRITLTNK GMNNFEQLVE GIENVRFLYG
FDNDGDSTPD RYIPESQVTS LMWDNESFQR LVAIKVFVLV RSVQNDPSYT NETTYQLGDK
QIQPIKDNFR RKVMSTTVVL ENPVLIRS
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