| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1103 |
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| Symbol | |
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| ID | 4922429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1272026 |
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| End bp | 1272547 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640162636 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_001093233 |
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| Protein GI | 127512036 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.803755 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAAAAC GTGGGAAAGG GTTTTCCCTA ATAGAGGTGA TGGTTTCGCT CGTCATTCTT
GTTATTGGCC TGATCGGCAT ATTTAATCTA CACGTTGTTT CTAAGCGAGG CAGCTTCGAG
TCTTTTCAAC AGACCCAGGC TTCATACTAC GCCAACGATA TTATCAATCG CATGAAGTTA
AATCCTAGCC AGATAGCAAA TTATGCTGGC ACCTATAGTG GCGCGCCAAC TCTGCCAAAT
CCCGCCTGTA CTGGCGCAGC CTTATGCTCT CCCTCTCAGA CTGTCGCTTG GGATTTATAT
GAGTGGCGTT CAGCGTTTAT CGGTGCGGCT GAGGTCGTGG GAGGGCAAAA TGTAGGAGGA
CTTGATACTC CGACAGCTTG CGTTACGGTT AATGGGAATA CCGTAAATGT TGTTATGGCG
TGGAAAGGGA TAAGAGCTAC CTCTGATGCA GGAAGCTCGA GTGATTGCGG CACAGCAAGC
AATCGACGTC GTCTTTACTC AATACAAACA GTGATCATCT AG
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| Protein sequence | MVKRGKGFSL IEVMVSLVIL VIGLIGIFNL HVVSKRGSFE SFQQTQASYY ANDIINRMKL
NPSQIANYAG TYSGAPTLPN PACTGAALCS PSQTVAWDLY EWRSAFIGAA EVVGGQNVGG
LDTPTACVTV NGNTVNVVMA WKGIRATSDA GSSSDCGTAS NRRRLYSIQT VII
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