| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1102 |
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| Symbol | ispH |
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| ID | 4922797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1270844 |
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| End bp | 1271794 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162635 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001093232 |
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| Protein GI | 127512035 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.26142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCAAC CTCCTCAAAG CCTGCAGATT AAATTGGCCA ACCCGCGTGG TTTTTGTGCC
GGTGTCGATC GGGCCATCAG CATAGTCGAG AGGGCGCTCG AGCTGTTCTC GCCGCCAATT
TATGTACGTC ATGAAGTGGT GCATAATCGA TATGTTGTGC AAAATCTCAA AGACAGGGGC
GCTGTGTTTG TCGACGAGCT AGATCAAGTG CCAGACGACA GCATAGTGAT CTTCAGTGCT
CACGGTGTAT CCCAGGCGGT TCGCGCCGAG GCGAAAAAAC GTGGCCTGCG AGTATTCGAT
GCCACCTGCC CATTGGTGAC CAAGGTGCAT CTGCAGGTCA CCCGTGCCAG TCGTAAGGGG
ATCGAATGTA TCCTTATCGG CCATGCGGGC CACCCTGAGG TTGAAGGGAC CATGGGACAA
TACGACAACC CTGAGGGCGG CGTATTGTTG GTGGAGTCAC CTGCCGATGT AGAGGCCTTA
GTGGTGAAAG ACCCTGATAA CCTCTGCTTC GTGACACAGA CGACTCTGTC TATGGATGAT
ACAGCAGATG TGATAGCGGC TTTGCAGAAG CGTTTCCCGT CAATCCAGGG ACCACGTAAG
GACGATATCT GCTACGCCAC CCAAAACCGA CAAGATGCGG TGCGTAATGT CGCCGATGAC
GTCGACCTCT TCATTGTGGT GGGTTCTAAG AACAGCTCCA ACTCGAATCG TTTGATGGAA
CTGGCCATTA AGAAGGGCAC ACAGTCTTAT CTTGTGGATA ATGCCGACGA CATTAAACCT
GAGTGGTTTA ACGATATCGA GAAGGTTGCC GTTACCGCTG GCGCATCGGC GCCGGAGGTG
TTGGTACAAC AGGTTATCGA TGCTATCGCC AAGTTGGCAC CTAGTGTGAT CACCGAGGTG
GAAGGGCGTA AAGAAGATAC CGTATTTGCC GTACCGGCTG AACTACGCTA G
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| Protein sequence | MTQPPQSLQI KLANPRGFCA GVDRAISIVE RALELFSPPI YVRHEVVHNR YVVQNLKDRG
AVFVDELDQV PDDSIVIFSA HGVSQAVRAE AKKRGLRVFD ATCPLVTKVH LQVTRASRKG
IECILIGHAG HPEVEGTMGQ YDNPEGGVLL VESPADVEAL VVKDPDNLCF VTQTTLSMDD
TADVIAALQK RFPSIQGPRK DDICYATQNR QDAVRNVADD VDLFIVVGSK NSSNSNRLME
LAIKKGTQSY LVDNADDIKP EWFNDIEKVA VTAGASAPEV LVQQVIDAIA KLAPSVITEV
EGRKEDTVFA VPAELR
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