Gene Shew_1096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1096 
SymbolrpsT 
ID4923464 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1263964 
End bp1264230 
Gene Length267 bp 
Protein Length88 aa 
Translation table11 
GC content46% 
IMG OID640162629 
Product30S ribosomal protein S20 
Protein accessionYP_001093226 
Protein GI127512029 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0268] Ribosomal protein S20 
TIGRFAM ID[TIGR00029] ribosomal protein S20 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000700681 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0325702 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCTAATA GCAAGTCTGC AAAGAAGCGC GCGCTTCAAT CTGAAAAACG TCGTCAGCAC 
AACGCTAGCC GTCGTTCTAT GCTACGTTCT TACGTTAAGA AAGTAATCGC TGCGATCAAC
ACTGGCGATC ACAAAGCGGC AACTGAAGCA TTCAATGCTG CACAACCAAT TGTTGACCGT
ATGGCGACTA AAGGTCTTAT TCACAAGAAT AAAGCTGCCC GTCATAAGGC TCGTCTAAAC
GCTAAGATCA AAGCACTAGC TGCTTAA
 
Protein sequence
MANSKSAKKR ALQSEKRRQH NASRRSMLRS YVKKVIAAIN TGDHKAATEA FNAAQPIVDR 
MATKGLIHKN KAARHKARLN AKIKALAA