| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1090 |
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| Symbol | |
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| ID | 4920779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1255197 |
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| End bp | 1256300 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162623 |
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| Product | OmpA/MotB domain-containing protein |
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| Protein accession | YP_001093220 |
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| Protein GI | 127512023 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000322286 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0373781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACA ATACATTGAA AGCTATTCTG CTTACATCAA TGCTCCCATT TGCAGCCAAT
GCAGCACAAG AACTCACCCC TTGGTATGTC GGTGGCGGTT TAGGCGTTAA CAACTACGAG
CCTAACTGCG ATCAGAAGAC CATGAAGCAG TGTGGTGAAG ACGATCCTTA TGCTTGGGAC
GTATTTGGTG GTTACCTCTT TAACGACTAT TTCGGTGTCG AGCTAGGCTA TCGTGACCTG
GGCCGTGCCG AGTGGGTCGA CTATGCCAAC AAACTTAACG ACGTCGGTGC TCGCGGTATG
ACACTTGGCC TGGTAGGTTT CTGGCCATTT GCCGACCGTT GGAGCCTGTC TGCCGAAGCG
GGTGCAATGA ACTACCTACT GTCAAACAAC AAACAGTGGG GTAGCGAGTA CTACAGCGAC
AGCGGTGTTG CACCTTACTT TGGTGCGGGT ATCGGCTACA ACTTCACCGA CAACCTCAAG
CTGCAAGCCA AGTATCGTCG TTATGAGAAT CTCGACGAAG ACAAGTGGAA CACACTTGAT
ATGGAAAGCA ACTACTGGGG TCTTGAGCTG AGCTACCGCT TCGGTCGCGC AGCACCAGCC
GCTGTAGCAG CACCTGTGGT TGTTGCACCA AAAGATTCAG ACAACGACGG TGTGACTGAC
GACAAAGACC AATGTGCCAA CACACCAAGC AACCACAAGG TTGATGCCAA TGGTTGTACG
GTTTACCGCG AAGTCACCGA AAAGCATGAA CTGGGTTCAA TTCGCTTTGC CAACAACTCA
GCCGTGGTGA ACTCTGCGTC TTACGGTCAA ATCGAAAAGT TGGCCAACTA CATGAACCAA
AACCCACGCG CAACCGTGTT GATCGGTGGT CACGCCTCTA ACGTAGGTAA CCCAGACTAC
AACATGGATC TGTCAGAGCG TCGTGCCAAT GCCGTTGCCG AACTGCTGGT TAGCAAGTAC
GGTATCAGCC AAGATCGCGT CAGCGCTAAA GGTTACGGTA TCACTCAGCC TCTGATCGAA
GGCAAAAGCG CCGAAGCCAA CAAGGCTAAC CGCCGCATCG AAGCCCACGT CACTGGCGTG
CGTAAAGAGC CGGTTCTAAA GTAA
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| Protein sequence | MMNNTLKAIL LTSMLPFAAN AAQELTPWYV GGGLGVNNYE PNCDQKTMKQ CGEDDPYAWD
VFGGYLFNDY FGVELGYRDL GRAEWVDYAN KLNDVGARGM TLGLVGFWPF ADRWSLSAEA
GAMNYLLSNN KQWGSEYYSD SGVAPYFGAG IGYNFTDNLK LQAKYRRYEN LDEDKWNTLD
MESNYWGLEL SYRFGRAAPA AVAAPVVVAP KDSDNDGVTD DKDQCANTPS NHKVDANGCT
VYREVTEKHE LGSIRFANNS AVVNSASYGQ IEKLANYMNQ NPRATVLIGG HASNVGNPDY
NMDLSERRAN AVAELLVSKY GISQDRVSAK GYGITQPLIE GKSAEANKAN RRIEAHVTGV
RKEPVLK
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