Gene Shew_1089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1089 
Symbol 
ID4923576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1253967 
End bp1254923 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content52% 
IMG OID640162622 
Producttransaldolase B 
Protein accessionYP_001093219 
Protein GI127512022 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000675704 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0360442 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAATA CACTAGAGCA ATTCAAATCT ATCACTACCA TAGTTGCCGA TACCGGTGAC 
ATCGAAGCCA TCAAGCGTTA TCAACCACAA GACGCCACCA CCAACCCCTC TCTTATCCTA
AAAGCAGCCC AAATTCCTGA ATACAAGCAC CTGATTGCCA ATGCCATCGA ATGGGCCAAG
GCGCAGAGTG ACGATCTGGC TCAGCAGGTC GAAGATGCCG GTGACAAGCT GGCGGTCAAT
ATAGGCCTGG AGATCCTAAA GATTGTTCCT GGTCGCATCT CTACCGAGGT GGACGCTCGC
CTTTCGTTCG ACAAGGCTGG CTCTATCGAG AAGGCGCATA AACTGATCAA GCTCTATGAA
GAAGCCGGCA TAGACAAGTC TCGTATCCTG ATCAAACTCG CCTCAACCTG GGAAGGGATC
TGCGCCGCCA AAGAGCTGGA AAAAGAAGGC ATCAACTGTA ACCTAACGCT ACTCTTCTGT
TTTGCCCAGG CCAGAGCCTG TGCCGAAGCC GGTGTTTACC TGATCTCGCC TTTCGTCGGC
CGTATTCTCG ATTGGTACAA GAAAGACACT GGCTTAGAGT ACAGCGCCGC AGAAGATCCA
GGCGTTGTCT CAGTCACCAA CATCTACAAC TACTACAAGC GTCACGGCTA CAAGACGGTT
GTGATGGGCG CCAGCTTCCG TAACACGGGA GAAATCATCG AACTGGCAGG CTGTGACCGT
CTAACTATCG GCCCTGCGCT GCTTGAAGAG ATGGCCAACA GCGACACACC AGTCGTGCAA
AAACTACAGG CCGCCAATGA AGTGGTCGCT CCTGGTGCAG CACTGAGCGA AGCCGAGTTC
CGTTGGGAAT TCAACCAAGA TGCGATGGCG GTAGAGAAAC TGGCCGAAGG TATCCGCAAT
TTTGCCATCG ATCAGGGCAA ACTTGAAACC ATGCTAAAAG CAGAACTCGA AGCCTAA
 
Protein sequence
MANTLEQFKS ITTIVADTGD IEAIKRYQPQ DATTNPSLIL KAAQIPEYKH LIANAIEWAK 
AQSDDLAQQV EDAGDKLAVN IGLEILKIVP GRISTEVDAR LSFDKAGSIE KAHKLIKLYE
EAGIDKSRIL IKLASTWEGI CAAKELEKEG INCNLTLLFC FAQARACAEA GVYLISPFVG
RILDWYKKDT GLEYSAAEDP GVVSVTNIYN YYKRHGYKTV VMGASFRNTG EIIELAGCDR
LTIGPALLEE MANSDTPVVQ KLQAANEVVA PGAALSEAEF RWEFNQDAMA VEKLAEGIRN
FAIDQGKLET MLKAELEA