Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1089 |
Symbol | |
ID | 4923576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1253967 |
End bp | 1254923 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640162622 |
Product | transaldolase B |
Protein accession | YP_001093219 |
Protein GI | 127512022 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000675704 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0360442 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAATA CACTAGAGCA ATTCAAATCT ATCACTACCA TAGTTGCCGA TACCGGTGAC ATCGAAGCCA TCAAGCGTTA TCAACCACAA GACGCCACCA CCAACCCCTC TCTTATCCTA AAAGCAGCCC AAATTCCTGA ATACAAGCAC CTGATTGCCA ATGCCATCGA ATGGGCCAAG GCGCAGAGTG ACGATCTGGC TCAGCAGGTC GAAGATGCCG GTGACAAGCT GGCGGTCAAT ATAGGCCTGG AGATCCTAAA GATTGTTCCT GGTCGCATCT CTACCGAGGT GGACGCTCGC CTTTCGTTCG ACAAGGCTGG CTCTATCGAG AAGGCGCATA AACTGATCAA GCTCTATGAA GAAGCCGGCA TAGACAAGTC TCGTATCCTG ATCAAACTCG CCTCAACCTG GGAAGGGATC TGCGCCGCCA AAGAGCTGGA AAAAGAAGGC ATCAACTGTA ACCTAACGCT ACTCTTCTGT TTTGCCCAGG CCAGAGCCTG TGCCGAAGCC GGTGTTTACC TGATCTCGCC TTTCGTCGGC CGTATTCTCG ATTGGTACAA GAAAGACACT GGCTTAGAGT ACAGCGCCGC AGAAGATCCA GGCGTTGTCT CAGTCACCAA CATCTACAAC TACTACAAGC GTCACGGCTA CAAGACGGTT GTGATGGGCG CCAGCTTCCG TAACACGGGA GAAATCATCG AACTGGCAGG CTGTGACCGT CTAACTATCG GCCCTGCGCT GCTTGAAGAG ATGGCCAACA GCGACACACC AGTCGTGCAA AAACTACAGG CCGCCAATGA AGTGGTCGCT CCTGGTGCAG CACTGAGCGA AGCCGAGTTC CGTTGGGAAT TCAACCAAGA TGCGATGGCG GTAGAGAAAC TGGCCGAAGG TATCCGCAAT TTTGCCATCG ATCAGGGCAA ACTTGAAACC ATGCTAAAAG CAGAACTCGA AGCCTAA
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Protein sequence | MANTLEQFKS ITTIVADTGD IEAIKRYQPQ DATTNPSLIL KAAQIPEYKH LIANAIEWAK AQSDDLAQQV EDAGDKLAVN IGLEILKIVP GRISTEVDAR LSFDKAGSIE KAHKLIKLYE EAGIDKSRIL IKLASTWEGI CAAKELEKEG INCNLTLLFC FAQARACAEA GVYLISPFVG RILDWYKKDT GLEYSAAEDP GVVSVTNIYN YYKRHGYKTV VMGASFRNTG EIIELAGCDR LTIGPALLEE MANSDTPVVQ KLQAANEVVA PGAALSEAEF RWEFNQDAMA VEKLAEGIRN FAIDQGKLET MLKAELEA
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