| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1050 |
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| Symbol | |
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| ID | 4923399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1212546 |
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| End bp | 1213478 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162583 |
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| Product | sigma E regulatory protein, MucB/RseB |
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| Protein accession | YP_001093180 |
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| Protein GI | 127511983 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3026] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00829985 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTTA TTTGGTTGGC CCTGTTAGTC CTCGTCTTCC CTGCCAGCGC GCAGGAAGAG
TTGTCCGCGA AGGCTTGGCT CGAAAATATG AGCCTCGCCT TGAAAGGGCA AGAATTCAAG
ATGTCCCTGA TCCATCTGCA AGCGGATCAC ATACGCCCCC TGGTTTATCT TCACGGCAAG
GTCGACGACC ATGAAGTCGC TTTTCTCGAG CACCTCAATG GTCCGCCGAA AAATGCAGTG
CGCGTGGGCA ATACAGTTAC CTTTATCGAA CACGACCAAC CCGCCTACAG CGTGCGCGCC
GAGCGTATTC AAGGCGTATT GCCACCTGCG TTTGCCGGCG TTATCTCTGA TCTGGAGTCG
GGTTATCAGT TTGTCCTGGG TGGACGTTCG CGTCTGGCCG GGCGTCCCAG CCAGTTAGTG
CGCATCATCC CCAACGATGA CAATCGCTAT AGCTATCAGG TATGGCTGGA TATGGATACC
TATCTGCCGC TGCGTTACGA CATGCTGAAC CTAGAGAAGC AGCTGCTGGA GCAGGTGCTG
GTGGTAGAGC TCATCGTTCT TGACGATGCG CCGGCGATTC TGCGCGAAGC CTATAAGCAG
GATTGGCCCG AGATCATGCC ACAGCCCCAG CGGGAGCAGG CCGACAACTG GCAGTTCAAA
TGGTTGCCGC AAGGTTTTAA GATCTTAGTC AAGGATAATC ACAGACTCAT CGGCAGCCAC
GAGGCGGTTG AGTATATCGC CCTGAGCGAT GGCCTGGTGA ACATCTCTGT GTATGTGGCC
AGAGCCGGCG AAACGGCGCT GCCCGACGAG CTGATGACAC GCAACGGTCT CTCTTTGGCC
GCCGAGCGTG TGGGCAATGC CGAGGTGGTT GCCGTGGGCA AGGTGCCGGC GGAGACACTC
AGCCGCATCG CCAAAAGCAT CACCATAGAG TGA
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| Protein sequence | MRLIWLALLV LVFPASAQEE LSAKAWLENM SLALKGQEFK MSLIHLQADH IRPLVYLHGK
VDDHEVAFLE HLNGPPKNAV RVGNTVTFIE HDQPAYSVRA ERIQGVLPPA FAGVISDLES
GYQFVLGGRS RLAGRPSQLV RIIPNDDNRY SYQVWLDMDT YLPLRYDMLN LEKQLLEQVL
VVELIVLDDA PAILREAYKQ DWPEIMPQPQ REQADNWQFK WLPQGFKILV KDNHRLIGSH
EAVEYIALSD GLVNISVYVA RAGETALPDE LMTRNGLSLA AERVGNAEVV AVGKVPAETL
SRIAKSITIE
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