| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1048 |
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| Symbol | |
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| ID | 4922529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1211260 |
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| End bp | 1211838 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162581 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001093178 |
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| Protein GI | 127511981 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00110624 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AGATAAGTGA TCAACAACTC GTTGAGCGAG TGCAACAAGG AGATAAAAAC
GCTTTTAACC TGCTGGTACA TAAATACCAG AGCAAAGTGA TTAATCTGAT TGCCCGTTAT
GTGCGTAATC AGGCCGACGT GGCAGATGTG GCACAGGAAG CCTTTATCAA AGCTTATCGT
GCGTTGCCTA ACTTTAGGGG TGAGAGTGCG TTTTATACTT GGTTGTATCG CATCGCGGTC
AATACCGCGA AAAATCATTT AGTGGCACAG GGCAGGCGAG CGCCTGCCAA CGATGTCGAT
GCGGAAGAGG CCGAATATTA CGACGGCAGT GATGCGCTAA AGGAGTTTGC CTCCCCAGAG
CGTCTCATGT TGTCAGATGA GATTCAGAAA GTGGTCTTCG ATACGCTCGA TACCTTGCCG
GAAGAATTGA AGATGGCTAT CTCTCTGCGT GAGCTCGATG GCATGAGTTA TGAAGAGATT
GCCAATGTGA TGGAGTGTCC AGTGGGCACA GTGCGTTCAC GTATCTTTAG GGCGCGTGAA
GCCATCGACA AGAAGTTGCA GCCTTTGCTG GAACGATGA
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| Protein sequence | MSGQISDQQL VERVQQGDKN AFNLLVHKYQ SKVINLIARY VRNQADVADV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDVD AEEAEYYDGS DALKEFASPE
RLMLSDEIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMECPVGT VRSRIFRARE
AIDKKLQPLL ER
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