| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1044 |
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| Symbol | nhaR |
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| ID | 4924287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1207778 |
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| End bp | 1208686 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162577 |
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| Product | transcriptional activator NhaR |
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| Protein accession | YP_001093174 |
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| Protein GI | 127511977 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.205907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGCATC TGAATTACAA CCATCTATAT TATTTCTGGA TGGTGCATAA GAAGGGCTCG
GTGGCCAAGG CCGCCGAAAC CTTATGTTTG ACCCCGCAAA CGGTAACTGG GCAGATCCGC
GTACTGGAGC AGCGCCTCAA CGGTACCCTG TTTAAGCGGG TGGGGCGTAA TCTCGAACCC
ACCGAGTTGG GCGAACTGGT GTTTCGCTAC GCCGATAAGA TGTTCAGCCT CAGCTATGAG
ATGTTAGATA TCCTGAATTA TCAAAAGGAT AATAATATCT TGTTCGAGGT AGGTATCGCC
GATGCGCTCT CTAAGGCCCT GGCCAGTCGG GTGCTGCTTT CGGTTGTGCC CAGCGATGGC
TCCATGCATC TAGCCTGTTA TGAGGCGACC CATGAGAGCC TGATGGAGCG CTTAAGGGCC
CATAAGCTGG ATATGATCTT ATCCGACTGC GCCGGTGAGT CGCTCAAGTA TCCAGAGATC
CTATCGAAGA AGCTTGGCGA GTGCGGCGTG GCGTTTTTCT CCTCGACCAC CTATGACAAA
CCCTTCCCCG CCTGTCTGGA GGAGGGCAAG TTGTTGATCC CAGGCAAGCG CACCTCGCTT
GGTCAGCAGT TACATCACTG GTTCGATGAG AATGGCCTGG ATGTCACCAT ACTCGGTGAG
TTCGACGATG CGGCTATGAT GAAGGCGTTT GGCTTCTTTA AGCAGGGGAT CTTCGTGGCG
CCATCTATCT ATAAGCAGGA TATTCTCGCC CACGATATGC AGATTCTGGG TGAGACTGAT
GACATCAAGG AGGTCTACCA TGTGATGTTT GCCGAGCGGA TGATCCAACA TCCGGCGGTA
AAATCCCTGC TGGAAACTGA CTTTAGCGAT CTCTTCGCCG GTAAGGACCT CGAGGTGGAG
CGGCTATAA
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| Protein sequence | MSHLNYNHLY YFWMVHKKGS VAKAAETLCL TPQTVTGQIR VLEQRLNGTL FKRVGRNLEP
TELGELVFRY ADKMFSLSYE MLDILNYQKD NNILFEVGIA DALSKALASR VLLSVVPSDG
SMHLACYEAT HESLMERLRA HKLDMILSDC AGESLKYPEI LSKKLGECGV AFFSSTTYDK
PFPACLEEGK LLIPGKRTSL GQQLHHWFDE NGLDVTILGE FDDAAMMKAF GFFKQGIFVA
PSIYKQDILA HDMQILGETD DIKEVYHVMF AERMIQHPAV KSLLETDFSD LFAGKDLEVE
RL
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