| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1040 |
|---|
| Symbol | |
|---|
| ID | 4924230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1204127 |
|---|
| End bp | 1204921 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162573 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093170 |
|---|
| Protein GI | 127511973 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0054225 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACCA TAGTTGTCAG TTGTATTGCC CTGGGGGCCT TCATCGGTTT TATGGCGGGC
CTGTTAGGTA TTGGCGGCGG CGTGATAGCC GTACCTGTAT TGCTGTTTCT TCTGCCCATG
GCGGGCGTAG TGCCAGAGCA TTTGACCCAC GTGGCTATTG CCACCTCGCT GGCGGCGATC
ATCCTAACCG GGGCCTCATC TGCCCGGGCC CATCATGCCC GCGGTAATAT TCCCTGGCAT
CTACTTACCA TCATGCTGCC GGGTTTGATA GTCGGTGCCC TGTCCGCAGG CTTTATCTCC
TCGCTGTTTT CCGCTCAGCT ACTCAAGCAA GTATTTGCCG GCTTCTTGGT GTTGATGGCG
CTGCAGATGG TGTTTCCCTT TAAGGCGGCC GAGGGCGAGC GAAGCTTGCC CGCGAGTCCC
TATCTGTTTG TTACCGCGAT GTTTGTCGCC ATCATAGCCG CACTAATGGG CATAGGCGGC
GGCATCTTGT TTATCCCATT TTTGACTTGG TGCGGCGTGC AGATGCGTCA TGCCATAGGT
TTCTCCTCTG TGACAGGGCT GATGATCGCC CTGTTTGGTA GCCTCAGCTA TGTGTTTGCT
GGCTGGGCGA CTCAAGGGCT ACCCGAATAC ACCTTGGGCT ATATCTATCT GCCCGCCTTG
TTCGGCATCG TCTGCACCTC TATGTTGACG GCGCCACTGG GGGCGAAGGC GGCCAGTGTC
TGGCCGACGG CAAGACTGAA GAAAATCTTC GCCGTCATGT TATTCTTTAC CGGGATCAAG
TTAGCCCTCA GCTAG
|
|---|
| Protein sequence | MFTIVVSCIA LGAFIGFMAG LLGIGGGVIA VPVLLFLLPM AGVVPEHLTH VAIATSLAAI
ILTGASSARA HHARGNIPWH LLTIMLPGLI VGALSAGFIS SLFSAQLLKQ VFAGFLVLMA
LQMVFPFKAA EGERSLPASP YLFVTAMFVA IIAALMGIGG GILFIPFLTW CGVQMRHAIG
FSSVTGLMIA LFGSLSYVFA GWATQGLPEY TLGYIYLPAL FGIVCTSMLT APLGAKAASV
WPTARLKKIF AVMLFFTGIK LALS
|
|---|
| |