| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1035 |
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| Symbol | |
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| ID | 4920630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1197527 |
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| End bp | 1198444 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162568 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001093165 |
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| Protein GI | 127511968 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000217191 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC TGCCGAGCCT GAAAAACCTT TACTATCTGG TCAATCTCTA TCAGGAACAG
AACTTTAATC GCGCGGCCAA GCTGTGCCAC GTGAGCCAGT CGACCCTGTC GAGTGGGATT
CAAAACCTGG AGGAGCAGCT GGGTCATCAA CTGATCGAGC GCGATCATAA GTCCTTTATC
TTCACCGCCA TCGGCGAAGA GGTGGTGCAA CGCTCCCGCA AGCTGCTGAC GGACGTCGAC
GATCTGGTGG AACTGGTGAA GCACCAGGGC CAGCCGATGA CAGGGGATAT CCGCCTGGGC
TGCATTCCTA CCATCGCGCC GTTTCTGCTG AGCCGGGTGG TGAAACATTG CCAGCAGGAA
TATCCCGAGC TGACGCTGTT TTTGAAGGAA GACACCACGG AGCGACTATT GGATGCCCTG
GGTAAGGGCG AATTGGATCT GCTGCTGCTG GCTCTGCCGG CCGACACCAG TGGCTATCAC
AGCATGAAGG TGGGGATAGA TCCCTTCAAG CTGGTGATGC ACAAGGAGCT CAGCAGTGAG
GTGCACCAGC CCATAGATTA CAAGGCGCTG CCTGATGAGA GCATCTTCCT ATTGCAGTCA
GAGCACTGTA TTACCGGCCA TGCCATCAGC GCCTGCAGTC TGGCCGATAG CGACAAGATC
AACCCCTTCG CTGCGACGAG TTTGCACACA CTGGTGCAGA TGGTAAACAG CAAGCTGGGG
ACCACCTTCC TGCCACAGAT GGCGATAGAT GCGGGGATAT TGAATGATAC GGATCTCACC
GCCCTGACGC CGCCGGGCGA GGCGCCTTAC CGGGATATAG GCCTGGTCTG GCGTCAGACC
TCCAGCCGTA TCATGACCTT CAGAACCTTA GGTAAGGCGA TTCAAAGCTT GTTGGAACAG
GCGGAGGCGG AGAGTTAG
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| Protein sequence | MKHLPSLKNL YYLVNLYQEQ NFNRAAKLCH VSQSTLSSGI QNLEEQLGHQ LIERDHKSFI
FTAIGEEVVQ RSRKLLTDVD DLVELVKHQG QPMTGDIRLG CIPTIAPFLL SRVVKHCQQE
YPELTLFLKE DTTERLLDAL GKGELDLLLL ALPADTSGYH SMKVGIDPFK LVMHKELSSE
VHQPIDYKAL PDESIFLLQS EHCITGHAIS ACSLADSDKI NPFAATSLHT LVQMVNSKLG
TTFLPQMAID AGILNDTDLT ALTPPGEAPY RDIGLVWRQT SSRIMTFRTL GKAIQSLLEQ
AEAES
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