| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1031 |
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| Symbol | gltD |
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| ID | 4920781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1189496 |
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| End bp | 1190905 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640162564 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_001093161 |
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| Protein GI | 127511964 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.473013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.613387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACG ATTTTCAATT TATCGAAGTA GGCCGTAAGG ATCCGACCAA GCATGACGCC
AAGCATCGCG CCACGCAGTT TATCGAGATC TATCAGCCCT TTGCACAGCC TCAGGTTAAC
GAGCAGGCAG ACCGCTGCCT CGACTGTGGT AACCCCTACT GTGAGTGGAA ATGTCCGCTG
CACAACTATA TCCCCAACTG GCTGAAGCTG GCCAAACAGG GACGCATACT CGAGGCGGCC
GAGCTGGTGC ATGAGACCAA CACACTGCCA GAGATCTGTG GCCGCGTCTG TCCCCAGGAC
AGGCTATGTG AAGGCGCCTG CACCCTCAAC GACGACTTTG GCGCCGTCAC CATAGGCAAC
GTGGAGAAAT ACATTACCGA CACCGCCATC GCCCAGGGCT GGCGCCCAGA CATGAGCAAG
GTGGTCAAGC GTCAGGAACG CGTCGCCATC ATAGGCGCGG GCCCAGCCGG CCTTGGCTGC
GCCGACATCC TCGCCCGCAA CGGCGTCAAG GCGGTGGTGT TCGACAAGCA TCCTCAGATA
GGCGGCCTGC TCACCTACGG CATTCCCGCC TTCAAGCTGG ATAAGTCTGT CATGGAGATC
CGCCGCACCG TCATGGAAGG GATGGGCATA GAGTTTAAGC TGGGCATCAC CGTGGGCCAA
GATATCGGCT TCGACACCCT ACTGGCCGAC TATGACGCCG TCTTCCTCGG CATGGGTACC
TACACCCCGA TGAAGGCCGG ACTGGAAAAC GAAGATGCCA AGGGCGTCTA CCAGGCCCTG
CCCTACCTGA TTGGTAACAC CCACAACGTC ATGGGCACCA CAGACGAAGA GACGCCTTAC
CTGAGCCTGG CCGGTCAGAA GGTAGTAGTA CTCGGTGGCG GCGATACCGC CATGGACTGT
GTGCGCACCG CCGTCAGACA GGGCGCCAGC GAGGTAACCT GTGTCTACCG CCGCGACGAA
GAGAACATGC CGGGCTCACG CCGCGAGGTG CAAAACGCCC GCGAGGAAGG AGTCAACTTC
CTGTTTAACC GTCAGCCGAC GGCCATCAAG ACCAGCGACG GCGCGGTTAG CGGCATCGAA
TGTGTCGAGA CCGCCTTGGG TGCACCGGAC GACTCGGGTC GTCGTCGCCC TGAGCCGATT
GAGGGCAGCG AGCAGCTGAT CGAGGCCGAT GCCATCATCA TCGCCTTCGG CTTCCAGCCG
AGCCCCGCCA AGTGGTTTGG CGACTATGGC ATAGAGCTGG ACCAATGGGG CCGCGTGGTG
GCGCCTAAGG TAGCCGATAA CCCCTTCCAG ACCAGCAACC CTAAGGTGTT CGCCGGTGGA
GACATGGTGC GCGGCTCAGA CCTTGTGGTC ACCGCCATCG CCGAGGGCCG CGACGCCGCA
CTTGGAATCC TCAACAGCTT CGAGGCTTAA
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| Protein sequence | MSNDFQFIEV GRKDPTKHDA KHRATQFIEI YQPFAQPQVN EQADRCLDCG NPYCEWKCPL
HNYIPNWLKL AKQGRILEAA ELVHETNTLP EICGRVCPQD RLCEGACTLN DDFGAVTIGN
VEKYITDTAI AQGWRPDMSK VVKRQERVAI IGAGPAGLGC ADILARNGVK AVVFDKHPQI
GGLLTYGIPA FKLDKSVMEI RRTVMEGMGI EFKLGITVGQ DIGFDTLLAD YDAVFLGMGT
YTPMKAGLEN EDAKGVYQAL PYLIGNTHNV MGTTDEETPY LSLAGQKVVV LGGGDTAMDC
VRTAVRQGAS EVTCVYRRDE ENMPGSRREV QNAREEGVNF LFNRQPTAIK TSDGAVSGIE
CVETALGAPD DSGRRRPEPI EGSEQLIEAD AIIIAFGFQP SPAKWFGDYG IELDQWGRVV
APKVADNPFQ TSNPKVFAGG DMVRGSDLVV TAIAEGRDAA LGILNSFEA
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