Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1016 |
Symbol | |
ID | 4923103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1176212 |
End bp | 1177129 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640162549 |
Product | hypothetical protein |
Protein accession | YP_001093146 |
Protein GI | 127511949 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0186847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCAAATT ATCATCGCTG GGTCGATCGC ATGCAAGTGC TCGAACGAAA AATTAGACCT TCGAGCGTTT ATCTGTTTTG TTTAGTGATC GTGGCCTTCT TACTCGGCGT GTTGACCTGG GACCTCTGGT CCGCCAATCA TTCGGTGACA CCGACCCAAT CCAATGGCCG CGAGGCCGAG CTGCGCCAGG CGCTCAAGGA GCAGGCCGAG GTGCTGGCCT CGCGTAATCT CGAGCTGTCG CTGGAGCGCG AAGCCAACAG TAACATGCAG AAGATGTTTC TCGAGCAGCA TCAGAAACAG AAGTCACTCG ACAGAGAGCT GGCCTTCTAC CGCAGCATCA TGGCGCCAGA GCATCAGGCC GACGGCGTCG CCATTCACGG ACTGGAGATG ACGCCGGGCC CACTGACCCA TCAGTATCAG ATCAAGTTAG TGCTTACTCA GCTGCAGAAG CGCAAGCAGG CGTTGAAGGG CCAGGCCAAG CTCGTTTTTG TCGGCGTGCA GCAGGGCAAG ATAGTGACCC TGCCACTTTC ATCGCTTACC GATGCCAAGT TTGCCTTTAG CTTCCGTTAT TTTCAGACCC TTGAGGCGCA GATCACCCTG CCAAGCGATT TCGAGCTGTC TCGGGTCGAG ACTGAGGTCA TAGTGCCCGC CAGTCGCTGG AGTAAGGGCG CAAAGGCGCA GCAGAGCTTC AGCGCCCAGG AACTTCTGGC CACGCCAGAG GGCGACACTG ACGTAGGTGC CCGCTCCGGC GGCGAGCCCA ACGCGGTAGA GGAGCCCCAT GGGGAGGAGG GCTATGCCCC CGCCGAGGAG GGCGAAGGTT CACAGATTTC AACAGAGCCA CGACTATTAC TTGAACAAAA TAGTCAGGTA TCGGATAATT CCGCTCAGCA AACCGATGTA AGAGGTAGTA ATGACTGA
|
Protein sequence | MPNYHRWVDR MQVLERKIRP SSVYLFCLVI VAFLLGVLTW DLWSANHSVT PTQSNGREAE LRQALKEQAE VLASRNLELS LEREANSNMQ KMFLEQHQKQ KSLDRELAFY RSIMAPEHQA DGVAIHGLEM TPGPLTHQYQ IKLVLTQLQK RKQALKGQAK LVFVGVQQGK IVTLPLSSLT DAKFAFSFRY FQTLEAQITL PSDFELSRVE TEVIVPASRW SKGAKAQQSF SAQELLATPE GDTDVGARSG GEPNAVEEPH GEEGYAPAEE GEGSQISTEP RLLLEQNSQV SDNSAQQTDV RGSND
|
| |