| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1000 |
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| Symbol | |
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| ID | 4923172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1158281 |
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| End bp | 1159294 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162533 |
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| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
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| Protein accession | YP_001093130 |
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| Protein GI | 127511933 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
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| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0039738 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGTTT TAGGTATAGA GACATCTTGT GATGAGACAG GTATCGCCGT CTATGATGAC
GAAAAAGGCC TGTTATCTCA TGCGCTTTAC AGTCAAGTTA AACTACACGC CGATTACGGC
GGGGTAGTGC CTGAGCTCGC ATCGCGCGAC CATGTGCGCA AGATCATCCC GCTGATAAGG
CAAGCCCTGA AAGAGGCTAA CTGCACTCAA GATGATATCG ATGCCATCGC CTATACCAAG
GGCCCAGGTC TGGTGGGCGC CCTGTTGGTG GGGGCCTGCG TCGGCCGCTC GCTGGCCTTT
GCCTGGGGCA AGCCCGCGGT GGGCGTGCAT CATATGGAAG GTCATCTGCT GGCGCCTATG
CTCGAAGAGG ATGTGCCGGA ATTTCCATTT CTGGCGCTGC TGGTCTCAGG CGGTCACTCT
ATGATGGTGG CGGTCGAGGG TATAGGTCGC TATCAGGTGC TGGGTGAATC TGTGGATGAC
GCCGCCGGTG AAGCCTTCGA TAAGACGGCT AAGCTGATGG GGCTGGATTA TCCTGGTGGA
CCGAGACTCG CTAAGCTGGC CGCCCAGGGC GAGCCTAACT GCTACCGTTT TCCACGCCCG
ATGACAGACC GTCCCGGGCT GGACTTTAGC TTCTCTGGCC TTAAGACCTT TGCCGCCAAT
ACCATCGCCG ATGAGCCCGA TGATGAGCAG ACCCGCGCCA ATATCGCTCG CGCCTTCGAA
GAAGCCGTGG TCGACACCCT GGCCATCAAG TGTAAACGCG CCCTGAAACA GACTGGCTAT
AACCGTCTGG TGATCGCCGG TGGCGTGAGC GCTAACAGCC GTCTGCGCGA GAGCCTGGCG
GAGATGATGC AGGGGCTCGG TGGTAGGGTC TACTACCCCA GAGGCGAATT TTGTACCGAT
AACGGCGCGA TGATCGCCTA TGCCGGCATG CAGCGACTCA AGGCCGACCA GCTAGAGCCG
CTCGCGGTGA AGGGGATGCC CCGCTGGCCG CTGGACTCGC TACCACCGGT CTAA
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| Protein sequence | MRVLGIETSC DETGIAVYDD EKGLLSHALY SQVKLHADYG GVVPELASRD HVRKIIPLIR
QALKEANCTQ DDIDAIAYTK GPGLVGALLV GACVGRSLAF AWGKPAVGVH HMEGHLLAPM
LEEDVPEFPF LALLVSGGHS MMVAVEGIGR YQVLGESVDD AAGEAFDKTA KLMGLDYPGG
PRLAKLAAQG EPNCYRFPRP MTDRPGLDFS FSGLKTFAAN TIADEPDDEQ TRANIARAFE
EAVVDTLAIK CKRALKQTGY NRLVIAGGVS ANSRLRESLA EMMQGLGGRV YYPRGEFCTD
NGAMIAYAGM QRLKADQLEP LAVKGMPRWP LDSLPPV
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