| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0996 |
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| Symbol | |
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| ID | 4923261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1153477 |
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| End bp | 1155327 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640162529 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001093126 |
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| Protein GI | 127511929 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0289616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCTA TGGAGCAAAC TCCGCAGTCG CAACTTAAAT TGTTGCTTGC CAAAGGTAAA
GAGCAAGGTT ATTTAACCTA TGCAGAAGTG AACGATCACT TGCCTGCAGA TATGGTCGAC
TCAGACCAGA TCGAAGATAT TATCCAGATG ATTAATGACA TGGGTATTCG CGTCTATGAG
CAGGCGCCGG ATGCCGATGA GATCATGATG TCTGAAGACA GCACCGATGA AGATGCTGCC
GAAGAAGCTG CCGCGGCTCT GGCTACGGTT GAAGCTGAAC TGGGTCGTAC CACAGATCCC
GTGCGTATGT ACATGCGCGA GATGGGTACG GTAGAACTTC TGACCCGCGA AGGCGAAATC
GTAATCGCCA AGCGTATCGA AGAAGGTATC AACACGGTTC AGGCGTCTGT AGCCGAATAT
CCTCAAGCGA TCGCCATGAT CCTTGAGCAG TACGACCGCT ACGAAGCTGA AGAAGTCAGA
CTATCAGACA TTATCTCTGG ATTTGTTGAC CCTAATGCCG AAGACATGGC GCCGACGGCG
ACCCATATCG GCTCAGAATT GTCGGACGAC GATCTCGACG ACGAAGATGA CGAGGGCGAT
GACGAGGACG ATGACGGCGA TGAAGAAGAT TCGCCAAAAG GCCCGGATCC GGAAGAAGCG
CGCGAGCGTT TCACCCAGCT GCGTGAAGCA CACGAAAAAG CCTTAAAAGT GATTGAACTT
AAAGGTCGTG AACACCCAGA AGCGACTGCC GCCCTGTTCG ACATTGGCGA GATCTTCAAA
GAGTTCCGTC TGGTACCTAA GCAGTTCGAC CGCCTGGTGA AGAACATGCG CGAAATGATG
GACAAGGTGC GTATTCAAGA GCGCCTCATC ATGAAGCTGT GTGTCGAGCA GGCCAAGATG
CCGAAGAAGA ACTTCGTTAA GGTCTACACC TCTAACGAGA GCAGCATCGA ATGGTTCAAC
GAAGAGATTG CCGCCAAGAA GCCCTATGCC GAAGGGCTGG AGATGGTTGC CGAAGACGTT
CAACGTTGCC GCGCCAAGCT CGATGCCATC GAGAATGAAA CCGGCCTGGC CATTGCCGCC
ATCAAGGATA TCAACCGTCG CATGTCTATC GGTGAAGCCA AGGCTCGCCG CGCTAAGAAA
GAAATGGTTG AGGCTAACCT GCGTCTGGTA ATTTCTATCG CGAAGAAATA CACCAACCGT
GGCCTACAGT TCCTGGATCT GATCCAGGAA GGTAACATCG GCCTGATGAA GGCGGTAGAC
AAGTTTGAAT ACCGTCGTGG TTACAAGTTC TCGACCTATG CAACCTGGTG GATCCGTCAG
GCGATCACGC GTTCGATTGC CGACCAGGCA CGTACCATTC GTATCCCGGT TCATATGATT
GAGACCATCA ACAAGCTCAA CCGTATCAGC CGTCAGATGC TACAAGAGAT GGGACGCGAG
CCGTCACCTG AAGAGCTGGC CGAGCGCATG TTGATGCCGG AAGATAAGAT CCGCAAGGTA
CTCAAGATCG CCAAAGAGCC TATCTCAATG GAAACCCCTA TCGGCGATGA TGAAGATTCG
CATTTAGGTG ATTTCATCGA GGATACTACC CTCGAGTTGC CACTGGACAG CGCCACCGGT
GAGAGCCTGA AGAACGCCAC CCACGAAGTG CTCGCCGGCC TGACCGCCCG TGAAGCCAAG
GTTCTGCGCA TGCGTTTCGG TATCGATATG AACACCGACC ACACCCTAGA AGAAGTGGGC
AAGCAGTTTG ACGTGACCCG TGAGCGTATT CGTCAGATCG AGGCCAAGGC ACTGCGTAAG
CTGCGTCACC CGTCTCGCTC AGAGATCTTG AAATCCTTCC TGGATGAATA G
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| Protein sequence | MISMEQTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE
QAPDADEIMM SEDSTDEDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQASVAEY PQAIAMILEQ YDRYEAEEVR LSDIISGFVD PNAEDMAPTA
THIGSELSDD DLDDEDDEGD DEDDDGDEED SPKGPDPEEA RERFTQLREA HEKALKVIEL
KGREHPEATA ALFDIGEIFK EFRLVPKQFD RLVKNMREMM DKVRIQERLI MKLCVEQAKM
PKKNFVKVYT SNESSIEWFN EEIAAKKPYA EGLEMVAEDV QRCRAKLDAI ENETGLAIAA
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PSPEELAERM LMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATG
ESLKNATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPSRSEIL KSFLDE
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