| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0979 |
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| Symbol | |
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| ID | 4922034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1124320 |
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| End bp | 1126770 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162511 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001093109 |
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| Protein GI | 127511912 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTTCG GCAACGATGT AGAGACTCGA CAAAAAATAT TAGTTGTCGA CGATGAGAGC
GCCAACCTAC ATCTGCTGGA GCAATCCCTT ACCGATCTGG CCGAGATCAT CTGTAGTACG
GGTGGTCAGG ACGCGCTGGA TAAGGCCGAG CAACATCAAC CCGCCATCAT ATTGCTGGAT
ATCGAGATGC CACAGATGAA TGGCTTCGAG ATGTGTAAGC GCCTGAAGAA TAACCCCAAG
ACCTGCAACA GCGCGGTGAT CTTCGTGACC GCCCACAGCG AGAGCAGCTT CGAATATAAA
TCCCTCAGTT CGGGCGGCAT AGACTTCATC CACAAGCCTA TCGATCTCGC CACCTGTCGC
CTGCGGGTCA AGAATCATCT GCTGCTCAAA CGTCAGGAGC AGACCATCAT AGAGGCGCGC
CAGGATATGC AAGCCCTGGT CAATCAGATC CCCTCTTACA TCTCCTATTG GTCTAAGGAT
CTGCTCAACC GTTTTCATAA CGACTACAAC GGCAGGTGGT TCGGCACTAT CCCCCAAGAT
GCACTGGGTA AGCCCGCCTC TAGCCTGCTA CCTAAGGCCC TGTATGAGGA GATACTGGCC
CGTATCGCCA GCAATAAACC TAAGCATCAG TTCGAGGTTG CCCTGGAAGA TACCCCGGGC
AAGATAGATT ATGCCCAGGC CCATCTCACC ATCAGGAAAC AAGATGGACA CGTGGCGGGC
ATGCTGCTGA CCCTGACGGA TATCACCTCC ATCAAGCGGG CCAAGAGCCA ACTGGATACC
GAGAATCGGC GCCTGAAGAT CATGCTCAAC GCCATCGGCG ACGCCGTCAT CGCCACCGAT
AGCGAGGCGA TGATCACCTT CATGAATCCC ATCGCAGAAC GCCTCACCGG CTGGGTGTGT
CGCGACGCCA TCGGCCTGCA TATCGAACAG GTGATGGATC TGTGCGATGC CAAGACCAAG
TACCGCAGCC CTAACCCGGT CACCATCGCC ATCAAGGAGA AACGCAACGT CGCCATGGCC
CTCAACTGTC AGCTCAACAG CTTGGATGGC ACCACCTTCC AGATTGAAGA CTCCGCCGCC
CCCATCACAG ACAGCGAAGG CAAGGTCACA GGCGGCATCA TAGTCTTCCA CGATTGCAGC
GAGTCTGTGG CCATGTCGCT GAAGATGAGC CACCTGGCCA ACCATGATCA GCTGACCGAC
CTGCCTAATC GCATCTTGCT GCATGACAGG ATCAATCACG CCTGCGCCGT GGCCGACTCC
TATGACAAGA GCGTCGCCCT GATGCTGATC GACATAGATC ACTTCAAATA CCTCAACGAC
TCCCTGGGCC ACAGCTATGG GGATCAGGTG ATCAAGCAGG TGGCGAAACG ACTGCAGTCC
CTCATCGACC CCAACGCCAC CCTGGGGCGC ATCGGCGGCG ACGAGTTTGT CCTGCTGCTG
CCTTCGCTCA CCGCCACCAG CCAGGTGGAC TCTATCGCCA CAGATATCGT CCGCAGCCTC
AACACGCCAT TTCGTATCGA CGGCCAGGAA TATACCCTGT CGGTCAGCGT CGGGATCAGC
ATCTACCCCT CGGACGCCCT CAGGGCCGAG GAGCTGATGA CCCATGTGGA TGCAGCCATG
TACCGCGCCA AAGATCTGGG GCGCAACCGC TTCTGTTACT TCTCCGAGGA TCTCGAGCAA
GAGCTAACGA AACGCCACGA GCTGGTCACC CTGCTGCGCA CCGCCATCGA CACGGAAGCG
ATAGAGGTCT ACTACCAACC AAAAGTGGAT CTGAAGACCA AAGAGATCAT AGGCGCGGAG
GCACTGGCCC GATTATACGA CCCCAGCGGC AAGCTGATCT CGCCGCTGGA CTTTATTCCC
CTTGCAGAGG AGACAGGCCT CATCCATCAG CTGGGTGAGA TCATCCTCAA ACAGAGCTGC
ATGGCCGCAA AGGCCTGGCA AAAAAGGGGT CGGCCGCTGC AGATCGCCGT CAACATCGCC
GCCAAGCAGT TTACCAATCC CGAGTTTTGC GACTCGGTGG CCAAGGTGCT GGAGCTCACC
GGACTCGACA GCAGCTTCCT CGAACTCGAG GTGACAGAGA GTTCCCTCAT GTATGATTTC
GACGAGGCGT TAAATGTGCT CAATACCCTC TCCTCTCTGG GACTGAGCAT CGCTATCGAC
GATTTCGGCA CCGGCTACTC CAGCCTCAGC TACCTCAAGT TCTTCCCGGT CAACACCCTG
AAGATAGATC AATCCTTCGT CAAAGATATG CTGGGGGATG AGCAGAGCCT GGATATCGTC
AAGGCGGTGA TCCATCTGGC CAAGTCCCTC AAGCTCAAGC TTATCGCCGA AGGCATAGAA
GATGCCGAAC AGCTGCAAAA ACTGGTGGCG CTGGAATGCG AACAGGGCCA GGGCTATATG
TTCAGCAAGC CGCTCCCCCT CAAAGAGTTC GACCAGCTCC TCAACCACTG A
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| Protein sequence | MLFGNDVETR QKILVVDDES ANLHLLEQSL TDLAEIICST GGQDALDKAE QHQPAIILLD
IEMPQMNGFE MCKRLKNNPK TCNSAVIFVT AHSESSFEYK SLSSGGIDFI HKPIDLATCR
LRVKNHLLLK RQEQTIIEAR QDMQALVNQI PSYISYWSKD LLNRFHNDYN GRWFGTIPQD
ALGKPASSLL PKALYEEILA RIASNKPKHQ FEVALEDTPG KIDYAQAHLT IRKQDGHVAG
MLLTLTDITS IKRAKSQLDT ENRRLKIMLN AIGDAVIATD SEAMITFMNP IAERLTGWVC
RDAIGLHIEQ VMDLCDAKTK YRSPNPVTIA IKEKRNVAMA LNCQLNSLDG TTFQIEDSAA
PITDSEGKVT GGIIVFHDCS ESVAMSLKMS HLANHDQLTD LPNRILLHDR INHACAVADS
YDKSVALMLI DIDHFKYLND SLGHSYGDQV IKQVAKRLQS LIDPNATLGR IGGDEFVLLL
PSLTATSQVD SIATDIVRSL NTPFRIDGQE YTLSVSVGIS IYPSDALRAE ELMTHVDAAM
YRAKDLGRNR FCYFSEDLEQ ELTKRHELVT LLRTAIDTEA IEVYYQPKVD LKTKEIIGAE
ALARLYDPSG KLISPLDFIP LAEETGLIHQ LGEIILKQSC MAAKAWQKRG RPLQIAVNIA
AKQFTNPEFC DSVAKVLELT GLDSSFLELE VTESSLMYDF DEALNVLNTL SSLGLSIAID
DFGTGYSSLS YLKFFPVNTL KIDQSFVKDM LGDEQSLDIV KAVIHLAKSL KLKLIAEGIE
DAEQLQKLVA LECEQGQGYM FSKPLPLKEF DQLLNH
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