| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0974 |
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| Symbol | |
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| ID | 4924065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1118906 |
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| End bp | 1120042 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162506 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_001093104 |
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| Protein GI | 127511907 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.255279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAGCA ATTCGGGCGT CACCAACAAA CCGACAACAA AGACGCAAGG AGAGGTGTTG
CTGAAGATAG AGAGAGTCAG CAAGCTATTT GACGATGTTC GTGCAGTGGA CGACGTCTCG
CTTAATATTA ATCGTGGGGA AATTTTTGCA CTGCTTGGCG GCTCAGGTTC GGGGAAATCG
ACGCTGCTTC GCATGCTGGC CGGCTTTGAG AAGCCGACCG AGGGACGCAT CTATCTCGAT
GGGCAAGACA TCACTGACAT GCCGCCCTAT GAGCGTCCTA TTAACATGAT GTTCCAATCT
TATGCCCTGT TTCCACACAT GACGGTGGCG CAGAATATCG CCTTCGGCCT CAAGCAGGAC
AAGATGCCCA AGGCCGAGAT TGAGCAGCGG GTGAAGGAGA TGCTCAAGCT GGTTCACATG
GAGCCTTATG CCAAGCGCAA GCCGAACCAA CTCTCAGGCG GTCAGCGTCA GCGTGTGGCC
CTGGCCCGTT CACTGGCCAA GCGTCCAAAG CTTTTGCTAC TGGACGAGCC CATGGGGGCG
CTGGATAAGA AACTCCGTAC TCAGATGCAG CTCGAGGTGG TGGACATTCT CGAGGCGGTT
GGGGTGACCT GTGTGATGGT AACCCATGAC CAGGAAGAGG CCATGACCAT GGCCGAGCGT
ATCGCCATCA TGAATGATGG CTGGATCGCC CAAACCGGTT CGCCAATGGA TATCTACGAG
AGCCCGGCTA ACCGCATGGT GGCAGAGTTT ATCGGCAGCG TTAACCTGTT CGAGGGCGAC
ATTGTCGAGG ATGAGGTGGA CCACGTGGTG ATCAATGTGG CCAACATTCC TCAGCCCTTC
TACGTGGGTT ACGGGGTGTC GACCAGTGTG GATACTACCC AGGTATGGGT GGCGATCCGT
CCCGAGAAGA CCCATATCAG CCGCGAGCAG CCAGAGGATG CGCGCAACTG GTGCGCAGGA
AAGGTGGAAG ATATTGCCTA CCTGGGCGGT ATCTCGGTTT ACTACATACG CCTGTGTAAC
GGACAGCTTA TTCAATCTGT GATGACCAAC AGTGACCGCC GCGCCGACTC GCCCACCTGG
GAAGAGGATG TCTTCGTCAG TTGGGAAGCG ACCAGTGCCG TTGTACTGAG ATCTTAA
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| Protein sequence | MASNSGVTNK PTTKTQGEVL LKIERVSKLF DDVRAVDDVS LNINRGEIFA LLGGSGSGKS
TLLRMLAGFE KPTEGRIYLD GQDITDMPPY ERPINMMFQS YALFPHMTVA QNIAFGLKQD
KMPKAEIEQR VKEMLKLVHM EPYAKRKPNQ LSGGQRQRVA LARSLAKRPK LLLLDEPMGA
LDKKLRTQMQ LEVVDILEAV GVTCVMVTHD QEEAMTMAER IAIMNDGWIA QTGSPMDIYE
SPANRMVAEF IGSVNLFEGD IVEDEVDHVV INVANIPQPF YVGYGVSTSV DTTQVWVAIR
PEKTHISREQ PEDARNWCAG KVEDIAYLGG ISVYYIRLCN GQLIQSVMTN SDRRADSPTW
EEDVFVSWEA TSAVVLRS
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