Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0973 |
Symbol | |
ID | 4923520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1117707 |
End bp | 1118807 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640162505 |
Product | extracellular solute-binding protein |
Protein accession | YP_001093103 |
Protein GI | 127511906 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0429024 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTTT TAAAGAAAAT GACAACACTC GCTCTGGTCA CCGCCGGGGT ATTTACAAGC TCTGTCGTCA GTGCTGAAGA GGTGGTTAGG GTCTATAACT GGTCTGATTA TATCGCCGAA GACACCTTGG CTAATTTCGA GAAAGAGACA GGCATCAAGG TGATCTACGA TGTGTTCGAC AGCAACGAAG TGGTCGAGGC CAAGTTGCTA TCGGGTCGTT CAGGCTATGA TATCGTGGTG CCGTCAAACA ACTTCCTGGC TAAGCAGATC AAGGCGGGCG CCTTCCAGAA GTTGGATCAG TCACAGCTGA CCAACCACAA GAACCTTAAT CCTGAGCTGA TGAAGCAGCT TGAAACTGCC GATCCACGTA ACGAGCACGC CGTGCCTTAT CTGTGGGGCA CCACAGGCAT AGGTTACAAC GAGGCCAAGG TGAAGCAGGT ACTGGGTGAA GACGCGCCGG TCGATTCTTT GGAGCTGATC TTCAATCCTA AGTATGCCGA GAAGATTGCT AAGTGTGGTT TCTCACTGCT GGACAGCGCC GACGAGATGC TGCCGATGGC GATGATCTAC CTGGGGCTGG ATCCTAACAG CACTAAGAGT GAAGACTACG CCAAGGCGGG TGAGGTGATG GCGAAGATCC GTCCCTTCGT GACCTATTTC CACTCATCAC GTTACATTAC CGATCTGGCC AACGGCGACA TCTGTGTGGC ATTCGGTTAC TCGGGTGACG TTTTCCAGGC CGCCGCGCGC GCCGAAGAGG CTGAGAATGG TAATGTGATC GGCTATGCCA TCCCGAAAGA GGGTTCTAAC CTTTGGTTCG ATATGTTGGC GATTCCTGCC GATGCCAAGA ACGTGAAGAA CGCTCACACC TTTATCAACT ACCTGCTGCG CCCAGAGGTG ATTGCCCCTA TCACTAACTA TGTGGCGTAC GCTAACCCTA ACGTGCCGGC CCAGGAGCTG GTGGATGAAG AGATCCGTAA CGACGCGGCT ATCTATCCAA CCCCTGAAGT GCTGTCACGT CTCTATGTGG CCGATGTACG TCCGATGAAG GCCCAGCGCG CCATGACTCG CGTATGGACC AAAGTCAAAT CTGGCATGTA A
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Protein sequence | MKLLKKMTTL ALVTAGVFTS SVVSAEEVVR VYNWSDYIAE DTLANFEKET GIKVIYDVFD SNEVVEAKLL SGRSGYDIVV PSNNFLAKQI KAGAFQKLDQ SQLTNHKNLN PELMKQLETA DPRNEHAVPY LWGTTGIGYN EAKVKQVLGE DAPVDSLELI FNPKYAEKIA KCGFSLLDSA DEMLPMAMIY LGLDPNSTKS EDYAKAGEVM AKIRPFVTYF HSSRYITDLA NGDICVAFGY SGDVFQAAAR AEEAENGNVI GYAIPKEGSN LWFDMLAIPA DAKNVKNAHT FINYLLRPEV IAPITNYVAY ANPNVPAQEL VDEEIRNDAA IYPTPEVLSR LYVADVRPMK AQRAMTRVWT KVKSGM
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