| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0957 |
|---|
| Symbol | |
|---|
| ID | 4923269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1100955 |
|---|
| End bp | 1101491 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640162489 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001093087 |
|---|
| Protein GI | 127511890 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3326] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.35989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAGA ATCGTCCTAA CAGTCACAGT GTAACACCTA GGCAAAGCGT AAAACCTAGG
CAAAACATAA GCGGGCCTGG AGAAACAACA GGCCCCAAGA CATCAAGCTC CAAGCGCCCT
CATGGGGGAA AGATCAGACA AAAAGGGACG AGATGGACTC TAGCCGATAA ACTACGCCTC
CTGCTGATGA TGGCACTGTT TATCGGCCTA CTACTTGCTA GTCTGTTGCA ACGACTACCA
ATAGCAGTCT TCATCTATTA CGTCGTCATA AGCCTCATCA CTTTTACCAG CTACGCGATC
GACAAACGTG CCGCCAGGCA AGACACCTGG CGCATTAAAG AGAGTCGTCT GCATTGGTTA
TCCCTACTGG GTGGATGGCC GGGGGCCATG CAGGGCCAGC AGCACCTGAG ACACAAGTCC
AGTAAGCGTG CTTTTCGTGT TGTGCTCTGG CTGACGGTGA TCATCAACCT CAGCCTGTTA
GGCGCACTGG TATCACCTCA AGGGCAAGCC CTGCTGACAC AGCTAGGGGT TAACTAG
|
|---|
| Protein sequence | MRQNRPNSHS VTPRQSVKPR QNISGPGETT GPKTSSSKRP HGGKIRQKGT RWTLADKLRL
LLMMALFIGL LLASLLQRLP IAVFIYYVVI SLITFTSYAI DKRAARQDTW RIKESRLHWL
SLLGGWPGAM QGQQHLRHKS SKRAFRVVLW LTVIINLSLL GALVSPQGQA LLTQLGVN
|
|---|
| |