| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0953 |
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| Symbol | |
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| ID | 4922027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1096450 |
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| End bp | 1097688 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162485 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001093083 |
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| Protein GI | 127511886 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAA ATGAACGCAG AAGATCAGTA GATCCTACCT TTATGCCAAG AAATGTATGG
GTATTAACCC TGGCTCAGGC CTTTGCCATG AGTGCAACCC CCATGATGAT GTTGCTCGGC
GGCCTGATTG GCGCCGAATT AGCGCCAACC CCGGCGCTGG CCACCCTGCC GATTGCCATC
ATGGTGATAG GCGTGGCCGT CTCAGTGGTG CCTGTCAGTC GTTTGATGCG TCGCTTCGGC
CGCAAGAAGA TTTTTCTGCT GGGTAGTGGC TTGGGGGCGA GTGGTGGTCT CCTGGCGGCC
TTCGCCACCC AGGCACAGCT CTTCGTGCCT TTCTGTCTCA GTGGCCTGCT CCTGGGCTCT
GCCGGGGCGA TAGTACAGCA ATACCGCTTT GCGGCCATGG AGTCGGTGGC GGCGCTCGAT
AGTGCCAAGG CGGCCTCCCG GGTCTTGGTA GGTGGTTTGG TGGCCGCCAT TATGGGGCCA
GAACTTGCGG TGCTGGGTGA AAACCTGTTT GCCACGCCTC ATGTGGGCGC CTTTCTGTTT
CTGATCTGTG TCTGTCTGAT GGCGGGGCTG GTGCTCTGTT TCTATCAGGA AAATCGCCAG
GACAAACCGG CCCATGCGGC ATCCCATCAG GCCGTGCGTC CCCTTGGCAA CATCTTGCTG
CAGCCTTCTA TCTGGACCGC CATCGGCGCG GCGACCATAG GCTATGGCAT GATGAGCTTC
ATCATGACGG CCACGCCCCT GCATATGCAT CACATGGAGC ACTATTCCCT GGCCGATACC
AAGTGGGTGA TCCAGAGTCA CATCATCGCC ATGTATTTCC CCTCGCTGTT TAGCGGCTAC
CTGGTGGCCA AGTTTGGCAC CAGCCGCATG ATGCTGGTGG GCCTGGCAGC CTATGGGGTG
ACCATCACGG TCGCCTTGCT CGGACGAGAG CTGTTGAACT ACTGGGTGGC CCTAGTGCTG
TTAGGCGTCG GCTGGAACCT GCTGTTTGTG GCTGGTACCG TCTTGTTGCC ACGCTATTAT
CACAGCGAAG AACGCTTCAA GGTTCAGGCC TTTAACGATG CCTTCGTCTT TGGTTCCCAG
GCCCTAGCCT CCTTGAGCGC CGGCTGGGTG CTGCACTGGT TAGGCTGGGA GGTGATGCTG
CTCACCTGTA TCCCGCTGCT GGCCATTCAT CTACTCCTGA TGGCCTGGGG GCGGGTGCCG
CTGAGGCTGG CAAATGAGCA GAAAATCGAT GAAACCTGA
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| Protein sequence | MLQNERRRSV DPTFMPRNVW VLTLAQAFAM SATPMMMLLG GLIGAELAPT PALATLPIAI
MVIGVAVSVV PVSRLMRRFG RKKIFLLGSG LGASGGLLAA FATQAQLFVP FCLSGLLLGS
AGAIVQQYRF AAMESVAALD SAKAASRVLV GGLVAAIMGP ELAVLGENLF ATPHVGAFLF
LICVCLMAGL VLCFYQENRQ DKPAHAASHQ AVRPLGNILL QPSIWTAIGA ATIGYGMMSF
IMTATPLHMH HMEHYSLADT KWVIQSHIIA MYFPSLFSGY LVAKFGTSRM MLVGLAAYGV
TITVALLGRE LLNYWVALVL LGVGWNLLFV AGTVLLPRYY HSEERFKVQA FNDAFVFGSQ
ALASLSAGWV LHWLGWEVML LTCIPLLAIH LLLMAWGRVP LRLANEQKID ET
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