Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0950 |
Symbol | |
ID | 4921463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1091279 |
End bp | 1092577 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162482 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001093080 |
Protein GI | 127511883 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTTG AATCTTTCAG TTTTGCTCCC GAGATTTTGC ACGCCATCTC AGAATGTGGG TACCAAAAAA TGACGCCCAT TCAAAAAGAG GCCATCCCGG CGATCCGTCG CGGACAGGAT GTGCTCGCCA GCGCCCAGAC GGGTACCGGC AAGACGGCAG CCTTCGCCCT GCCTATCCTG CAGAAGATGT TCGATAGCCC AAGCGACACT CAGCGCTCCA ACACCCGCGC GCTAATCCTG GCCCCCACCC GCGAACTGGT GGCTCAGGTG GCCGACAACA TCAAGCAGTA CAGCCGTTAC CTGCCCATCT CAGTGCTGAC CGTCTATGGC GGCGTCAAGA TGGATACCCA GGCGGCTAAG GTAAAGAAAG GCGCCGACAT CATAGTGGCC ACCCCGGGTC GCCTGCTGGA GCACCTGCAA GCCTGTAACC TCAACCTGTC TAACGTCGAC TTTCTGGTGC TGGATGAGGC CGACCGCATG TTGGATATGG GCTTCATCAC AGACATCCAG AAGATCCTGC AGCAGGTTAA TCGCGACCGT CAAAACCTGC TGTTTTCCGC CACCTTCTCC AGCGCCGTCA AGCAGCTGGC CAACGAGATG CTGGTCAAGC CTAAGCTGAT CGCCGTCGAC AAGCAGAACA CCACGGCGGT AACCGTCAGC CAGGTGGTCT ACCCAGTGGA GCAGCGTCGC AAGCGTGAAC TCCTCTCAGA GCTTATCGGC AAGAAGAACT GGCAACAGGT ATTGGTATTT ACCGCCACCC GTGAGGCCGC CGACGTCCTG GTGAAAGAAC TCAACCTGGA CGGCATCCCC TCGGCTGTAG TTCACAGCGA GAAGGCCCAG GGCAATCGTC GCCGTGCGCT GCGAGAATTT AAAGAGGGTA AGGTGCGCGC CCTGGTTGCC ACCGAGGTCG CCGCCCGCGG CCTGGACATT CCCGAGCTGG AATATGTGGT CAACTTCGAC CTGCCCTTCC TGGCTGAGGA CTATGTTCAC CGTATCGGTC GTACCGGCCG CGCCGGTCGC ACTGGCGTCG CCATCTCGCT GGTGAGCCGC GAGGAGGAGC GCACCTTAGC CGACATCGAG AAATTGATCG GCAATAAGAT CCGCCGCATC ACCATCCCAG GCTATGAGGT GGGCAGTCGC GATCTCTTGA TCAAACAGCT GCAGAAGCGT CGCAGCTTCG CCAAGAAACA GCAGCGCAGC GACAACGTGG GCGCCCAGGT GATCGCCGAG AAGAACATGG GGGCTCGCCG GGTGAAGGTG AAGAACTCAT CCAACGCGAA AATAAAGAAG CAAAAATAA
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Protein sequence | MRFESFSFAP EILHAISECG YQKMTPIQKE AIPAIRRGQD VLASAQTGTG KTAAFALPIL QKMFDSPSDT QRSNTRALIL APTRELVAQV ADNIKQYSRY LPISVLTVYG GVKMDTQAAK VKKGADIIVA TPGRLLEHLQ ACNLNLSNVD FLVLDEADRM LDMGFITDIQ KILQQVNRDR QNLLFSATFS SAVKQLANEM LVKPKLIAVD KQNTTAVTVS QVVYPVEQRR KRELLSELIG KKNWQQVLVF TATREAADVL VKELNLDGIP SAVVHSEKAQ GNRRRALREF KEGKVRALVA TEVAARGLDI PELEYVVNFD LPFLAEDYVH RIGRTGRAGR TGVAISLVSR EEERTLADIE KLIGNKIRRI TIPGYEVGSR DLLIKQLQKR RSFAKKQQRS DNVGAQVIAE KNMGARRVKV KNSSNAKIKK QK
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