Gene Shew_0950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0950 
Symbol 
ID4921463 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1091279 
End bp1092577 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content58% 
IMG OID640162482 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001093080 
Protein GI127511883 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATTTG AATCTTTCAG TTTTGCTCCC GAGATTTTGC ACGCCATCTC AGAATGTGGG 
TACCAAAAAA TGACGCCCAT TCAAAAAGAG GCCATCCCGG CGATCCGTCG CGGACAGGAT
GTGCTCGCCA GCGCCCAGAC GGGTACCGGC AAGACGGCAG CCTTCGCCCT GCCTATCCTG
CAGAAGATGT TCGATAGCCC AAGCGACACT CAGCGCTCCA ACACCCGCGC GCTAATCCTG
GCCCCCACCC GCGAACTGGT GGCTCAGGTG GCCGACAACA TCAAGCAGTA CAGCCGTTAC
CTGCCCATCT CAGTGCTGAC CGTCTATGGC GGCGTCAAGA TGGATACCCA GGCGGCTAAG
GTAAAGAAAG GCGCCGACAT CATAGTGGCC ACCCCGGGTC GCCTGCTGGA GCACCTGCAA
GCCTGTAACC TCAACCTGTC TAACGTCGAC TTTCTGGTGC TGGATGAGGC CGACCGCATG
TTGGATATGG GCTTCATCAC AGACATCCAG AAGATCCTGC AGCAGGTTAA TCGCGACCGT
CAAAACCTGC TGTTTTCCGC CACCTTCTCC AGCGCCGTCA AGCAGCTGGC CAACGAGATG
CTGGTCAAGC CTAAGCTGAT CGCCGTCGAC AAGCAGAACA CCACGGCGGT AACCGTCAGC
CAGGTGGTCT ACCCAGTGGA GCAGCGTCGC AAGCGTGAAC TCCTCTCAGA GCTTATCGGC
AAGAAGAACT GGCAACAGGT ATTGGTATTT ACCGCCACCC GTGAGGCCGC CGACGTCCTG
GTGAAAGAAC TCAACCTGGA CGGCATCCCC TCGGCTGTAG TTCACAGCGA GAAGGCCCAG
GGCAATCGTC GCCGTGCGCT GCGAGAATTT AAAGAGGGTA AGGTGCGCGC CCTGGTTGCC
ACCGAGGTCG CCGCCCGCGG CCTGGACATT CCCGAGCTGG AATATGTGGT CAACTTCGAC
CTGCCCTTCC TGGCTGAGGA CTATGTTCAC CGTATCGGTC GTACCGGCCG CGCCGGTCGC
ACTGGCGTCG CCATCTCGCT GGTGAGCCGC GAGGAGGAGC GCACCTTAGC CGACATCGAG
AAATTGATCG GCAATAAGAT CCGCCGCATC ACCATCCCAG GCTATGAGGT GGGCAGTCGC
GATCTCTTGA TCAAACAGCT GCAGAAGCGT CGCAGCTTCG CCAAGAAACA GCAGCGCAGC
GACAACGTGG GCGCCCAGGT GATCGCCGAG AAGAACATGG GGGCTCGCCG GGTGAAGGTG
AAGAACTCAT CCAACGCGAA AATAAAGAAG CAAAAATAA
 
Protein sequence
MRFESFSFAP EILHAISECG YQKMTPIQKE AIPAIRRGQD VLASAQTGTG KTAAFALPIL 
QKMFDSPSDT QRSNTRALIL APTRELVAQV ADNIKQYSRY LPISVLTVYG GVKMDTQAAK
VKKGADIIVA TPGRLLEHLQ ACNLNLSNVD FLVLDEADRM LDMGFITDIQ KILQQVNRDR
QNLLFSATFS SAVKQLANEM LVKPKLIAVD KQNTTAVTVS QVVYPVEQRR KRELLSELIG
KKNWQQVLVF TATREAADVL VKELNLDGIP SAVVHSEKAQ GNRRRALREF KEGKVRALVA
TEVAARGLDI PELEYVVNFD LPFLAEDYVH RIGRTGRAGR TGVAISLVSR EEERTLADIE
KLIGNKIRRI TIPGYEVGSR DLLIKQLQKR RSFAKKQQRS DNVGAQVIAE KNMGARRVKV
KNSSNAKIKK QK