| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0923 |
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| Symbol | valS |
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| ID | 4922037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1049573 |
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| End bp | 1052452 |
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| Gene Length | 2880 bp |
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| Protein Length | 959 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162455 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | YP_001093053 |
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| Protein GI | 127511856 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGA CATACAACCC ACAGTCAATC GAACAGGCTC TGTACCAGAA CTGGGAAGAG
AAAGGATACT TTAAGCCCCA CGGCGATGAG TCGAACGGCA ATTACTGCAT CATGATCCCG
CCACCAAACG TGACCGGTAG CCTGCACATG GGTCATGCCT TCCAAGACAC CATCATGGAT
ACCCTAATCC GTTACCAACG CATGAAGGGC AAGAACACCC TGTGGCAGGT AGGTACCGAC
CACGCGGGTA TCGCCACCCA GATGTTGGTG GAGCGCAAGG TAGAGGCCGA AGAGGGCAAG
AGCCGTCACG ACCTGGGCCG TGAAACCTTT ATCGACCGTA TCTGGGACTG GAAAAACCAA
TCTGGTGGCA CCATCACCAA GCAGCTGCGC CGCCTGGGCG CCTCGGTCGA TTGGGATCGT
GAACGCTTCA CCATGGATGA AGGCATGTCA GCCGCGGTAC AAGAGGTGTT TGTGCGTCTG
TACAACGACG ACCTCATCTA CCGTGGCAAG CGTCTGGTTA ACTGGGATCC TAAGCTACAC
ACAGCCATCT CAGACCTCGA AGTCGAAAAC AAAGAGAAGC AGGGCAGCAT GTGGCACTTC
CGCTACCCGC TGGCCGACGG CGCACTGACC GCCGACGGTA AAGACTACCT TGAAGTGGCT
ACCACGCGTC CAGAAACCAT GCTGGGCGAC AGCGCGGTTG CCGTACACCC AGACGATGAG
CGCTATCAGT CGCTGATCGG CAAGTTCATC CTGCTGCCAA TCGTTAACCG TCGTATCCCT
ATCGTCGCCG ACGACTATGT GGACATGGAG TTCGGTACCG GCTGTGTGAA GATCACCCCG
GCTCACGACT TCAACGACTA TGAGGTAGGT AAGCGTCACA ACCTGCCCAT GTTCAACATT
CTGACCATAG ACGCGGCCAT CCGCAGCCAG GCAGAGGTGG TTAACTCAGA TGGCACCGCC
AACGACGAGC TAGATGGCAG CCTACCAGAG CGCTTTGCCG GCTTGGACCG TTTCAAGGCC
CGTACCGCTA TCGTCGACGA GTTCGAGTCA CTCGGCCTGC TGGGCAAGAT TGACCCGCAC
GCCCTCAAGG TGCCTTACGG CGACCGCTCT GGCGTGGTGA TCGAGCCACT ACTGACAGAC
CAGTGGTATG TAGCCGTGGC CCCAATGGCC AAGACCGCCA TCGAAGCGGT TGAGAACGGT
GACATCAAGT TTGTGCCGCA GCAGTATGAA AACATGTACT TCTCTTGGAT GCGCGACATT
CAAGACTGGT GTATCTCGCG TCAGCTGTGG TGGGGTCACC GTATCCCGGC ATGGTACGAC
GAGGCCGGTA AGGTATATGT GGGCCGCGAC GAGGCCGAGG TACGCGCCAA GCATAATCTG
GATGATTCAG TGGTGCTGCG CCAAGACCCA GACGTGCTGG ATACCTGGTT CAGCTCGGCG
CTGTGGACCT TCTCAACCCT AGGCTGGCCA GACGATACCG AGGCCCTCAA GACCTTCCAC
CCAACCGATG TGTTGGTGAC AGGTTTCGAC ATCATCTTCT TCTGGGTGGC GCGCATGATC
ATGATGACCA TGCACTTCAT CAAGGATGAA GATGGCAAGC CACAGGTGCC GTTTAAGACG
GTGTATGTGA CCGGCCTTAT CCGTGACGAA CAGGGCAACA AGATGTCCAA GTCTAAGGGT
AACGTACTGG ATCCGCTGGA TATGATCGAC GGTATCGATC TCGAAGCCCT GGTTGAGAAG
CGCACCGGCA ACATGATGCA GCCTCAGCTG GCGGCTAAGA TCGAGAAGAG CACCCGTAAA
GAGTTTGCCG ACGGCATCGA GGCCCACGGC ACCGACGCCC TGCGTTTCAC CCTGGCAGCC
ATGGCCTCTA CCGGCCGTGA CATCAACTGG GACATGAAGC GTCTGGACGG TTACCGCAGC
TTCTGTAACA AGATCTGGAA CGCGTCGCGC TATGTGTTGA TGAACACAGA AGAGCAAGAT
TGTGGCCCTC AGTCTCCAAA CGGAAAAGCT GACGGCGAAA TGCAGCTGTC ACTGGCGGAT
CGCTGGATCG TCGGCCTGTT TAACCAGACG GTTAAGGCCT TTGACGAGCA CATGGAAAAC
TACCGTTTCG ACCTGGCGGC CAACACACTG TACGAGTTCA CCTGGAACCA GTTCTGTGAC
TGGTATCTTG AGCTGACCAA GCCAGTACTG CAAAACGGCA CCGAGGCCGA GCAGCGCGGT
ACCCGTCACA CCCTAGTGAC AGTACTGGAA GCCATGCAAC GTCTGCTGCA TCCTATGATG
CCATACCTGA CAGAGACCAT CTGGCAGCGC GTTAAGCCGC TGGCAGGCGT CGAGGGTGAC
ACCCTGATGC TGGCCGAGTT CCCTGTATAT CAGGCAAGCA AGGTAGATGA AGCCGCCATG
GCGGATCTTG AGTGGGTCAA GCAGGTGATC GTTGCCGTGC GTAACATCCG CGCCGAGCTG
AATATCGCCC CAAGCAAGCC GCTCAATGCC ATGCTACGCA GCGTCAGCGC GCAAGACAAG
GCTCGCGTCG AAGCTAACCA GACTTTCTTC GCCACCCTGG CCAAGCTGGA GTCGATGACG
ATTCTGGCGG ACGGTGACAC CGCGCCTATG TCGACCACTC AACTGGTTGG CGAGATGGAG
CTGTTGATCC CTATGGCAGG CCTTATCGAT GTGGCCGCCG AGATGGCGCG TATCGACAAG
CAGTTTGAAA AACTAGTGGG CGAAGCCAAG CGTATCGAAG GCAAGCTCAA TAACCAGGGC
TTCGTGGCCA AGGCGCCGGA AGCGGTTATT GAGAAGGAGC GCGCCAAGCT GGCCGAGTTC
CAACGGGATA TGGACAAGCT ATGCGAGCAG AAAGCCGAAC TGGCTAAGCT CGAAGGCTAA
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| Protein sequence | MEKTYNPQSI EQALYQNWEE KGYFKPHGDE SNGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLIRYQRMKG KNTLWQVGTD HAGIATQMLV ERKVEAEEGK SRHDLGRETF IDRIWDWKNQ
SGGTITKQLR RLGASVDWDR ERFTMDEGMS AAVQEVFVRL YNDDLIYRGK RLVNWDPKLH
TAISDLEVEN KEKQGSMWHF RYPLADGALT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE
RYQSLIGKFI LLPIVNRRIP IVADDYVDME FGTGCVKITP AHDFNDYEVG KRHNLPMFNI
LTIDAAIRSQ AEVVNSDGTA NDELDGSLPE RFAGLDRFKA RTAIVDEFES LGLLGKIDPH
ALKVPYGDRS GVVIEPLLTD QWYVAVAPMA KTAIEAVENG DIKFVPQQYE NMYFSWMRDI
QDWCISRQLW WGHRIPAWYD EAGKVYVGRD EAEVRAKHNL DDSVVLRQDP DVLDTWFSSA
LWTFSTLGWP DDTEALKTFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE DGKPQVPFKT
VYVTGLIRDE QGNKMSKSKG NVLDPLDMID GIDLEALVEK RTGNMMQPQL AAKIEKSTRK
EFADGIEAHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKIWNASR YVLMNTEEQD
CGPQSPNGKA DGEMQLSLAD RWIVGLFNQT VKAFDEHMEN YRFDLAANTL YEFTWNQFCD
WYLELTKPVL QNGTEAEQRG TRHTLVTVLE AMQRLLHPMM PYLTETIWQR VKPLAGVEGD
TLMLAEFPVY QASKVDEAAM ADLEWVKQVI VAVRNIRAEL NIAPSKPLNA MLRSVSAQDK
ARVEANQTFF ATLAKLESMT ILADGDTAPM STTQLVGEME LLIPMAGLID VAAEMARIDK
QFEKLVGEAK RIEGKLNNQG FVAKAPEAVI EKERAKLAEF QRDMDKLCEQ KAELAKLEG
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