| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0920 |
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| Symbol | |
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| ID | 4922044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1042420 |
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| End bp | 1043958 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162452 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001093050 |
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| Protein GI | 127511853 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.732822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACG CCAATGATGC TTACGCAGAT AATGATCTGC GTGAAGTTAA GCAGCTGGGA
ATGTGGGCCT CCATTGCTAG CCTAAGTTAT ATTTTCTGGA TCGTCGGCGG CATGGAGCTG
GTCGAACGTA TCGCCTATTA TGGCGTGAAA GCCAGTGCCG GCCTCTACGC CAAGGCGCCC
GTCTCTCAGG GCGGCCTGGG GATCAGTCTA CACGACTATG GTGTCATCAT CTCGGTGTGG
GCCCTGATGC AGACCTTTAT TCCTGTGTTT ACCGGCGGCA TCTCAGACCG TGTCGGTTAC
AAAGAAACCA TCTTCGCCTC GACACTGATC AAGATCTCCG GCTACTTGGT GATGGCCTTC
TTCCCTAACT TCTGGGGCTT CCTCTTCGGC GCCATCCTGC TGGCAGGCGG CACGGGTATC
TTCAAGCCTG GCATTCAGGG CACCTTGGTA CTCTCCACCG GCCGACAAAA CACCTCTATG
GCCTGGGGGA TCTTCTATCA GGTGGTCAAC ATAGGCGGCT TCCTCGGTCC TCTGGTGGCC
GTGCATATGC GTCAGCTCTC CTGGGACAAC GTCTTCTACG CCTGCGCCGC CATCATCTCA
CTCAACTTCC TCTTCCTGCT CGCCTATAAG GAGCCGGGAA AGGAGGAGCG CATCGAGCGC
AACCGCAAGA TCAAGAGCGG TGAGATCACC CAAGAGGCAC TGTGGAAAGA TGCCCTGCAC
GAGCTGAAGA AGCCTGTGGT GATCTACTAC ATGCTGGTGT TCGCCGGTTT CTGGTTCCTG
TTTAACTCCC TGTTCGACGT CTTGCCGATT CATATCGCCG AGTGGGTCGA TACCAGCGTG
ATCGTCACCA GCCTGTTTGG CAGTGAGGGC ACCTCAAACG GCATCTTGCA ATTCTGGCTC
GGCCTGGATA ATTCGGGTAC TAAGGTGATG CCAGAGGGGA TGCTAAACCT CAACGCCGGC
ATGATCATGA CCAGCTGCTT CCTGGTTGCC GCGCTTACCG CTAAATACCG CATCACCACC
GCCATGCTAG CGGGCTGTCT ACTGAGTATC ATCGCCTTCG TGCTTATCGG CGCCACCAAC
GCCGCCTGGA TGATAGTGCT GGCGATTGCC ATGTTCTCCT TCGGCGAGAT GATGATCAGC
CCCAAGAAGA ACGAGTTTAT GGGTAACATC GCCCCTAAGG GTAAGAAGGC CATGTACCTG
GGCTTCGTCA TGCTGCCACA AGGGATAGGC TGGGGATTGG AAGGCTACTT CGGTCCTAAG
CTGTATGAGA TGTACGCCTC GAAAGAGATC TTCTCTCGCG AGCTGCTGCT CGATCGTGGC
ATGAGCGCCA GCGATATCGC CGCCATTCCT CAGGGTGAAG CCTTTACTAC TCTGGTGAGC
TACACAGGTG AGTCGGCGCA GTCCTTGACG ACCCTGCTCT ATAACAGCCA CAACATAGGC
ATGGCCTGGT ATATCATCGC CGCTATCGGC ACCATCTCGG CCGTGGGGAT CTTCATCTAC
GGCAAGTGGT TGCTGACGTT GCAGCGCGCC CGCGCCTAA
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| Protein sequence | MSDANDAYAD NDLREVKQLG MWASIASLSY IFWIVGGMEL VERIAYYGVK ASAGLYAKAP
VSQGGLGISL HDYGVIISVW ALMQTFIPVF TGGISDRVGY KETIFASTLI KISGYLVMAF
FPNFWGFLFG AILLAGGTGI FKPGIQGTLV LSTGRQNTSM AWGIFYQVVN IGGFLGPLVA
VHMRQLSWDN VFYACAAIIS LNFLFLLAYK EPGKEERIER NRKIKSGEIT QEALWKDALH
ELKKPVVIYY MLVFAGFWFL FNSLFDVLPI HIAEWVDTSV IVTSLFGSEG TSNGILQFWL
GLDNSGTKVM PEGMLNLNAG MIMTSCFLVA ALTAKYRITT AMLAGCLLSI IAFVLIGATN
AAWMIVLAIA MFSFGEMMIS PKKNEFMGNI APKGKKAMYL GFVMLPQGIG WGLEGYFGPK
LYEMYASKEI FSRELLLDRG MSASDIAAIP QGEAFTTLVS YTGESAQSLT TLLYNSHNIG
MAWYIIAAIG TISAVGIFIY GKWLLTLQRA RA
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