| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0919 |
|---|
| Symbol | |
|---|
| ID | 4923668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1040176 |
|---|
| End bp | 1042299 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162451 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001093049 |
|---|
| Protein GI | 127511852 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.788628 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGTCA AAGATACCTC TTCCAGCCTG TTTCTCATTG CGATAAAAGA GTCTTTTATT
GCCCTCTTGC CTTTTATCTT CGTTAACTCG CTGCTGGCAC TGATCGTCGC CTTGGTGGAT
GTGTGGCAGC CCAGCTGGCA GGGCAGTGCC GCCTATGCTT GGCTGAGTCA GTTTGGTCGT
CTCCTGTTTA GCTTCTTTCC CTTGATGGCG CTGCTCTCCT TGTCATTTCA TTTTGCCAAG
TATCTCCATG TCTCGGCGGT GGTGGTGGCG TCGCTCTCCA TCGGCAGTCA GATTGCCCTG
CATATCCATG GCAGCGAGGC AATCGACCTT AGCAACGGCT TCGACTTTCT GTTTGGCGAT
GCCAGGGCGA TTATCACGCC GATTCTGGTT GCCTACCTGC TGCAACGCCT CATGGCGATT
AAGGCGCTGA GCTTGCTGCA AAGCACCAGC CTGAGCAGCT ACCTTAAGCT GCATCTCAAC
CTGTTTATTC CCTTGATCCT CTGTTTCGTG CTGGTGACCA CCGGCATCTA CTGGGTGGGG
GAGCTGTTGG GCATGGTGCT GAGTCCGCTG GTGGATTCCC TTGCCGCCAG CAGCACACTG
CTTCAGCTGT TTGTCAGGGT GTTGGCCACC CATGTGCTTT GGTGCTTCGG TGTCCATGGG
GATATCGCCT ACATGTTGGT GCTTGGGGTC GACAATGGAT TACAACAGGT TGCGCCGAAT
CTGACGCTGT CTCAGTTTAC CGATCTCTTC GTGTTGCTCG GCGGAAGCGG CGCCACTCAC
TCGCTGCTGA TCGCCCTGTT TATCGCCTCC AAGGATAAGA ATGCCGTCAA TGTGGCCAAG
TTGGCCTTGC CCTTCGCCCT GTTTAACATC AACGAGATCC TCATCTACGG CCTGCCGATC
ATCTTTAACC CCAGGTTGAT GCTGCCCTTC GTGTTAGTGC CCCTGTTTAA TACCCTGATA
GGCACCCTGT TGATCGTCAG TGGCTGGGTG AGCTTCGCCG GTAACGACTT TGCCTGGATC
ACCCCCATCT TTCTCAATGG CTATGTGGCG GGCGGCACCC TGGCGCTGCC CCTGGTACAG
CTCTTATTGG TATGCGCCGG GGTTTTTATC TATCTGCCTT TCGTGCGCCG CTATAGCCTG
CTGGTGGGCA ATAAGGGATT CGAGCGGGAC CTGATCAAGC GGGTGCAGCT GCAGCAGGAT
ATCGAGAAGA TCAGCGAGCG AAACTATGCC CGTCAGCAGT CAGAGGATCT CGCCGCCAAC
CTAAACCTGG AGAAGACCAT TAAGGCGGTG CTCAACGGTG AGTTGCTGCT CTATTACCAA
CCTAAGATCA GCCTGAGTGA CAGGCGGGTC GTCGGCTATG AGGCGCTGCT GAGGCTGAGA
AACGAGCGTG GTCAGGTGGA GGGCCCCTAT TTTATTCCCG CCTTCGATCA GGCGGGGTAT
TCCAATTTGA TCGACAGCTT CGTCATCCGC CGCCTGCGAG ACGACCTACA GGCCTGGGCC
AAGCAGGGCT TCTACCCCAG AGTCAGCATC AACCTCAATC CCAATAGCGT CCTGAGTCAG
GATGTGCAGT CTATGCTGAT CGAGCTGCTT GGCGACATGG CGGACAGAGT CGATATCGAA
GTGCTCGAGT CTATGTTTGT GGCGGACCTC ACTGCCGTCG AGGCCAGCAT GGCCTACCTG
CGCCAATATG GGTTCTCCTT TGTGCTCGAT GACTTCGGCA CGGGTTTTTC CAGCATCAGC
CTGCTGAGCA AGATCACCAT AGATGGGGTC AAGCTAGACA GATCGATATT GGAGAATACC
GGGCATCACA AGGGGCAGGT GCTCTACCGT CATACCTGCA TGTTGTGTCG CAGCCTGGGC
TTTAATCTGG TGGCCGAGGG GGTAGAGACC AAGGCCGAGG AGGCCTTCGT CGCCTCAGCC
GGGGTCTCGA CGGTTCAGGG TTGGCTGTAT GCCAAGGCGA TGCCGGCCGC CGAGGCCAAG
CGCTACGCCC TGCTGCAGGA GCGTTTCAGC GAGCAGGCTG CTGATTCAAG GGGAGACTCG
AAGGCTGAGT TAAAGGCAGA TGTAAAGGCA GATGTAAAGA CAGAGGTAAA GGCAGGGTTA
AAGGCCAATT CAAAGACTGA ATAA
|
|---|
| Protein sequence | MAVKDTSSSL FLIAIKESFI ALLPFIFVNS LLALIVALVD VWQPSWQGSA AYAWLSQFGR
LLFSFFPLMA LLSLSFHFAK YLHVSAVVVA SLSIGSQIAL HIHGSEAIDL SNGFDFLFGD
ARAIITPILV AYLLQRLMAI KALSLLQSTS LSSYLKLHLN LFIPLILCFV LVTTGIYWVG
ELLGMVLSPL VDSLAASSTL LQLFVRVLAT HVLWCFGVHG DIAYMLVLGV DNGLQQVAPN
LTLSQFTDLF VLLGGSGATH SLLIALFIAS KDKNAVNVAK LALPFALFNI NEILIYGLPI
IFNPRLMLPF VLVPLFNTLI GTLLIVSGWV SFAGNDFAWI TPIFLNGYVA GGTLALPLVQ
LLLVCAGVFI YLPFVRRYSL LVGNKGFERD LIKRVQLQQD IEKISERNYA RQQSEDLAAN
LNLEKTIKAV LNGELLLYYQ PKISLSDRRV VGYEALLRLR NERGQVEGPY FIPAFDQAGY
SNLIDSFVIR RLRDDLQAWA KQGFYPRVSI NLNPNSVLSQ DVQSMLIELL GDMADRVDIE
VLESMFVADL TAVEASMAYL RQYGFSFVLD DFGTGFSSIS LLSKITIDGV KLDRSILENT
GHHKGQVLYR HTCMLCRSLG FNLVAEGVET KAEEAFVASA GVSTVQGWLY AKAMPAAEAK
RYALLQERFS EQAADSRGDS KAELKADVKA DVKTEVKAGL KANSKTE
|
|---|
| |