| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0916 |
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| Symbol | |
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| ID | 4923006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1035608 |
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| End bp | 1036318 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162448 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001093046 |
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| Protein GI | 127511849 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.952694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTA AACGCGCCAG GCTGGATCGT TTTATCAGTC AGCATTGTCA GATCCCTCGC
AAGCAGGTAC GCCTCATCTT GGCAAAGGGC CGGGTGAGTG TCGACGGTCA GGTGGTGCGC
GATGCCGACT GTCAGATAGA TCAGTTCTCT CAAGTGATGC TCGATGGGCA GGCGCTGAGA
CAGGAGCAGC CCATCTATCT CATGCTGCAT AAGCCGGTTG GTGTGGTGAG CGCGACCAAG
GACGATGAGC ACAAGACGGT GATGGATCTC TTGCCCGACT ATCAGGACAA GGGGTTGCAC
ATTGTCGGAC GGCTGGATCT CAACACCTCG GGTTTGCTGC TGCTCACCAA CGACAGCCGC
TGGTCGAAGC GTATCATGTC GCCGGAGCAT AAGGTGGCCA AGCAGTATCT GGTCACCCTC
AAGGCTCCCC TCACTCAGGC CTATGTGAAG GCCTTTGCCG AGGGTTTCTA CTTTGCTTTT
GAGAATATTA CCACTCAGCC TGCACAGCTT GAGATCCTAG AACCCCACCT GGCCAGGGTC
ACCCTGCATG AGGGGCGCTA CCATCAAATC AAGCGCATGT TTGGCCGTTT TCGCAATCAG
GTGATGGCGC TGCACAGGCT CTCCGTGGGT AACCTAATCC TGGATGAAAC CTTGGCTGTA
GGGCAGTATC GCCCGCTGAC GCCACAGGAG GTGGCTAGCA TATTCGGCTA A
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| Protein sequence | MSAKRARLDR FISQHCQIPR KQVRLILAKG RVSVDGQVVR DADCQIDQFS QVMLDGQALR
QEQPIYLMLH KPVGVVSATK DDEHKTVMDL LPDYQDKGLH IVGRLDLNTS GLLLLTNDSR
WSKRIMSPEH KVAKQYLVTL KAPLTQAYVK AFAEGFYFAF ENITTQPAQL EILEPHLARV
TLHEGRYHQI KRMFGRFRNQ VMALHRLSVG NLILDETLAV GQYRPLTPQE VASIFG
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