Gene Shew_0915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0915 
Symbol 
ID4920832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp1034962 
End bp1035618 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content58% 
IMG OID640162447 
Productputative transcriptional regulator 
Protein accessionYP_001093045 
Protein GI127511848 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.949391 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTAAGA AGACCAGCGA CAAGATCATC GACCATATCA AGATCCACGG CCCCAGTACC 
GCCAAGGTAT TGGCCGAGCT GTTTGCGTTG ACCACCATGG GGGTTAGGCA ACATCTGCAG 
GCCTTGGAAG AGGAGGGGAT CTTGAGTTTC GAAGACAGAA AGGCGAGTCG CGGTCGTCCC 
ACCCGTTACT GGGGGCTTAC CGAGAAGAGC TACAAGCTGT TCCCAGACCG ACACGACGAT 
CTCTCCAGTC AACTGATCGA CTCGGTGCGG GTAGTCTTTG GTGACCAGGG GCTGGATCAA 
TTGATCGATC ACCGAGAGCA GGCGAGTCGG CGTTTGTATC AGGAGGCGCT GTCGCAAGCG 
ACGGGTCTGG CGGATAAGTT AGCCGCGCTG GCAAGGCTCA GGACCCAGGA GGGGTATGTC 
GCCTCAGTCG AGGAGCAAGA TGGCGTCTTT TGGCTGCTGG AAAATCACTG CCCCATCTGC 
GCCGCGGCGA GTCGCTGCGC TAACTTCTGC CGCTCAGAGT TGCAGCTGTT TCAAGAACTG 
TTTAGCGAAC TGGCGAGCGT CAGCCGCGAG GAGCATATCA TAGCCGGCGC CAGACGCTGC 
GCCTACAAGC TGGTGCCGCT CGCCTCTCAC GCACCGACAC AACAAGATGT CCGCTAA
 
Protein sequence
MSKKTSDKII DHIKIHGPST AKVLAELFAL TTMGVRQHLQ ALEEEGILSF EDRKASRGRP 
TRYWGLTEKS YKLFPDRHDD LSSQLIDSVR VVFGDQGLDQ LIDHREQASR RLYQEALSQA 
TGLADKLAAL ARLRTQEGYV ASVEEQDGVF WLLENHCPIC AAASRCANFC RSELQLFQEL 
FSELASVSRE EHIIAGARRC AYKLVPLASH APTQQDVR