| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0907 |
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| Symbol | |
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| ID | 4920774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1028079 |
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| End bp | 1030838 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162439 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001093037 |
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| Protein GI | 127511840 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.651038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCAG CAGGGAATAG CATAGACGAC TCGCCGTTTG CACAGCTTAT CTGCGACAAG
CAAGGAGTGA TCATTGAGGC CAACGACGCC TTGTATGCGC TGTTTGAGCT CAACCATGAA
GCCGTCGTCA AGCGCCCACT CGAGCAGCTA CTCACGCTAA ATCAGACCGA CTCAAGCGAC
TCACTGCTTG AGGCCATCAC TCACGCCTTG GCACTTACCT TAGCAGATAG GCAATCGCTC
GATGTGCGTC TTCATCGCCA ATCCAGGACG CCTTGGTATC AGCTGTTTCC CCAGGCGCTA
AGCAATAATC GCTACCTGCT GCTGTTTGTC CCCCAGCGCG ACGATCCCAA CATCAATCAG
GCATACCTCA AGCGTTTCGA GGCCTTTCTC TGCTCCGCCG ATATCGGCAT CTGGCATTAT
GACTCCACCA CCGGCGAGAC ACGTTTCTCC AACCGGGTGA AGGAGTTGCT GCAACTTAAC
CATCACAGCC CCCTGAGCTG GCAGAGTCTA CAGCAGATGG TCACGGTGAA AGATCGTTAT
AAGTTCGACC CCTTTCTCGC CCCCTCGCCC TCGGGGAAAC ATAAGCTAGC GTTTCGTTTT
CGCATCGACT CGAACGATGT CGCCAGGGTG TACGAGCTTT TCGCCGAGCA TATCTATCTG
GAAAATGGCC ACTTCAAGCT GCTCGGCCTT ATCAAAGATC AGACAGAGTC TAAGGCGATG
CTCGACGCCC TCAACGAGGC CAACGAGTCG AAGAAGCTGG CGCTCGAGGC CGGTAACATA
GGCAACTGGC GGGCACAGAT AGATGAACAG GGGCAGTGGA TCTGGCAGTG GGATCAGAGG
GCCAACGAGA TGTTTTGCCT CAACATAGAA GACATTGGCG TGTTGGAGAA GTGGGCCGAG
CGGATCCACC CGGAAGACTT CCCCGCCGTG ATGGCCGCGG TGGAAGACTC GCTGGCCAAT
GGCAATCCGT TTCATCAGGA GTATCGCGCC ATTCTGCCAA ACCAAGAGAT CATCTACATA
CTGGCCAAGG GCAAGGTGAG CCAGGGGCAG AACCAGCAAA ACAGCCGCAT CGATGGCATC
TGCATCGATC AGACTCCCAT CTACCAAGCG CGCCTGGCGC TGCAGGAAAG CTACCGCTCA
CTCGAGAGCC GGGTAAAGCA GCGCACCACA GAATTGCAGC TCGCCAAGGA GCGGGCCGAA
ATCGCCAGTC AGGCCAAGAG CGAATTTCTC TCTATGATCA GCCACGAACT GCGCACCCCA
ATGAACGCGG TGATCGGCGC ACTGGAGCTG CTCTCCCTGG CCGACAAGTC GGGCGAGGAA
AGAGATCTTA TCGAGACGGC GTCGACCTCG GCCAATAATC TCATCTATAT CCTCAACGAC
ATCCTCGACA TCAACAAAAT AGAGTCGGGC AAGATGCAGC TGGAGCAGCA AGACTTCCAC
CTCGCCGGGG TGATCGCCGA TCTGATCAAG AGCTTCTCAC CGGTGGCCAG TCGTCAGGGG
TTACGCTTTG CCGTGCAGGA AGCCCTGGAG CTGCCCGACT GGGTCGAAGG GGATATCGTC
AAGGTGCGGC AGATCCTCAG CAATCTGCTC AGCAACGCGA TGAAATTCAC CCACAGCACA
CAGGAGCAGA CCGGCTGCGT GTCGCTAAAC ATCACGGTAG GTGAGCAGAA TGACATAGTG
ACCCGGGTAC GCTTTACCGT GACAGACAAT GGCATAGGCA TAGACAAGGC GACCCAGAAA
CGTCTGTTTA CCCCCTTCGT GCAGGCCCAG CGCTCGACCA CGCGCAACTA TGGCGGCACG
GGCCTGGGCC TGGCTATCTG TGGCAAGCTC ACCAACCTGA TGGGCGGCAG CATTAGCCTT
AAAAGCGAAC TTGGCCAGGG GGCCCAGTTC TGTGTAGAGC TTCCCTTCTG GCGCGCCCAT
CACCACGAAC AAACTCAAGA ACTTAGCGAA CACACCATAG GGATGGTGAA CCTGGGCCAG
CCCCAGACCA CGCTTGATTG GATAAAACAG TGTTTGACCG ACAAGGGGGG CAGGGTCAAA
TGCTACCAGG CCGAGCAACT GGGCATCGAT ACCCTGGCTC TGCCTCTGGT GATCATTCTC
GCCACCGGCG AGGCTGACGA GCTGCGCTTT CTCGCCAACC AGGCGGCGAG TCCAAAGGGC
CACAGCAACT GGCTTGTCGC CCTGCCCCAA CATCAACGCA AGGCGCTGAC ACAGACGATT
CCCCAGATAG ACAGCCTGGA CAGCTATCTG TTATCCAAGG CCTTGCTGCT CAAGGCGGTG
CACAAACGCC TAAACACAGG CCTTGCCATC GACCTCGACG AGATGGAGCT GGATCTCTGC
GATCCGCTGA CGCAGGAGCC AATGCCAGGG CTTAAGGGAG ACGCCGACAT ACTGGTGGTT
GAAGATAACC CGTTAAACCA GAAGCTAATT CTTAAACAAC TGGACATGCT CGGCTATCGC
TGCAACCTCG CCGAAGATGG TCTGGCCGGG GTGCACCTCT GGCAGTCGGC AGACTATAAG
CTGATCCTTA CTGACTGCCA CATGCCCAAC CTGGACGGCT ATGACATGTC TAAGCAGATC
CGCCAGATAG AGAACAGTAC CCAACGTAAA TCTGTGCCCA TAGTGGCCAT CACAGGGGCC
GCCATGGCCA CCGAACTCGA CGACTGCTAC CGCTCGGGCA TGAACGACTT TGTCAGTAAA
CCTGTGCAGC TTAGAGACCT AAAGAAGGTC ATCCAGAAAT GGTATCGCCA TGAAGAATAG
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| Protein sequence | MAPAGNSIDD SPFAQLICDK QGVIIEANDA LYALFELNHE AVVKRPLEQL LTLNQTDSSD
SLLEAITHAL ALTLADRQSL DVRLHRQSRT PWYQLFPQAL SNNRYLLLFV PQRDDPNINQ
AYLKRFEAFL CSADIGIWHY DSTTGETRFS NRVKELLQLN HHSPLSWQSL QQMVTVKDRY
KFDPFLAPSP SGKHKLAFRF RIDSNDVARV YELFAEHIYL ENGHFKLLGL IKDQTESKAM
LDALNEANES KKLALEAGNI GNWRAQIDEQ GQWIWQWDQR ANEMFCLNIE DIGVLEKWAE
RIHPEDFPAV MAAVEDSLAN GNPFHQEYRA ILPNQEIIYI LAKGKVSQGQ NQQNSRIDGI
CIDQTPIYQA RLALQESYRS LESRVKQRTT ELQLAKERAE IASQAKSEFL SMISHELRTP
MNAVIGALEL LSLADKSGEE RDLIETASTS ANNLIYILND ILDINKIESG KMQLEQQDFH
LAGVIADLIK SFSPVASRQG LRFAVQEALE LPDWVEGDIV KVRQILSNLL SNAMKFTHST
QEQTGCVSLN ITVGEQNDIV TRVRFTVTDN GIGIDKATQK RLFTPFVQAQ RSTTRNYGGT
GLGLAICGKL TNLMGGSISL KSELGQGAQF CVELPFWRAH HHEQTQELSE HTIGMVNLGQ
PQTTLDWIKQ CLTDKGGRVK CYQAEQLGID TLALPLVIIL ATGEADELRF LANQAASPKG
HSNWLVALPQ HQRKALTQTI PQIDSLDSYL LSKALLLKAV HKRLNTGLAI DLDEMELDLC
DPLTQEPMPG LKGDADILVV EDNPLNQKLI LKQLDMLGYR CNLAEDGLAG VHLWQSADYK
LILTDCHMPN LDGYDMSKQI RQIENSTQRK SVPIVAITGA AMATELDDCY RSGMNDFVSK
PVQLRDLKKV IQKWYRHEE
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