Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0887 |
Symbol | |
ID | 4920700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1007257 |
End bp | 1008210 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640162420 |
Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
Protein accession | YP_001093018 |
Protein GI | 127511821 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism [R] General function prediction only |
COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.245056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.881373 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATAG TGGTACTCGA TGGTTACACC CTCAACCCTG GCGATCTCGA CTGGCAGCCC CTCGCGGCGC TGGGCGAGTT TCACTGCTTT GACAGAACCT CCCCGGCCGA ACTCCTGGAT CGCGCTCAGG GGGCCCAGGT GCTGCTGACC AATAAGACTG TGCTCGACGC CGATGCGCTT AGGGCACTGC CAGATCTTGA GTATATCGGC GTGCTCGCCA CTGGCACCAA CGTGGTGGAC CTCAATGCCG CCCGCGAGCT TGGGATCAAG GTGACCAATG TGCCAGGCTA TGGCCCGGAT GCGGTGGCCC AGATGGTGTT TGCCCATATT CTTCATCATA CCCAGCGATT GTCGGACCAT CACAACGCCG TGGTGGCCGG GGCCTGGTCT CAGGCGCCAG ATTTCTGCTT TACCCTGGCG CCGCTACAAT CCCTAAAAGG TAAGACCCTC GGCTTGGTGG GGTTTGGCGA CATAGGTCGG CAGGTGGCTA ATATTGCGAA GGCGTTTCAG ATGCGGGTGC TGGTCAACAC GCCATCCATT AAGCATGACC TCCCTGAGGG GGTCAGCTGG TGTGAGCGTG AGGCGCTCTT TGCCAGCGCC GATATCATCT CACTGCACTG CCCGCTAACG CCGGATACCG AGAAGTTGAT TAACCGAGAG CGGCTCAGCG CCATGAAGCC AAACGCCATC TTAATCAACA CGGCCAGGGG CGGTCTGGTG GACGAGCAGG CCTTGGCCAA TGCCCTGGCT CAGGGGGAGA TTGCCGCCGC CGGGGTGGAT GTGCTCTCTA GCGAGCCGCC ACAGGCTGAC AATCCGCTGC TGAGCGCACC TCATATCAGC ATCAGCCCGC ATAATTCCTG GGCGACCAAG GAGGCACGCC AGCAACTGCT GACGATAGCG GTCGATAACC TCAAGGGCTA TCTGGCGGGT CAGCCGATGA ACCTGGTGAA TTAA
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Protein sequence | MKIVVLDGYT LNPGDLDWQP LAALGEFHCF DRTSPAELLD RAQGAQVLLT NKTVLDADAL RALPDLEYIG VLATGTNVVD LNAARELGIK VTNVPGYGPD AVAQMVFAHI LHHTQRLSDH HNAVVAGAWS QAPDFCFTLA PLQSLKGKTL GLVGFGDIGR QVANIAKAFQ MRVLVNTPSI KHDLPEGVSW CEREALFASA DIISLHCPLT PDTEKLINRE RLSAMKPNAI LINTARGGLV DEQALANALA QGEIAAAGVD VLSSEPPQAD NPLLSAPHIS ISPHNSWATK EARQQLLTIA VDNLKGYLAG QPMNLVN
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