| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0884 |
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| Symbol | |
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| ID | 4920611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1005062 |
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| End bp | 1005811 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162417 |
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| Product | nucleotidyl transferase |
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| Protein accession | YP_001093015 |
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| Protein GI | 127511818 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000795934 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCCA TGATACTCGC CGCCGGTCGC GGTGAACGCC TGCGCCCCCT GACCGACACC
CTGCCTAAAC CCCTGGCAGA AGTCGCGGGC AAGCCGCTCA TCGTCTATCA CATAGAGCGT
CTCGCGGCCC TTGGCATCAC AGAGATAGTG ATCAACCACG CCTGGCTGGG CCACAAGCTC
GAGGCCAGTC TGGGGGATGG CAGCGCCTGG GGCGTGAGTA TCAGCTACAG CCCAGAGACT
GAGGCGCTCG AGACAGGCGG CGGCATCAAG CAGGCCTTGC CTCTGCTTGG GGATGAGCCT
TTTCTGGTGC TCAATGGCGA TGTCTATATC GACAGCTTGC CGACGGTGAA GGGCCTGCCG
CTGGATGCCG CACTCAATAC GGCAAAGATT GCCGAGCTGA TGAGCGAGCA GGAGGCTTAT
CTCTGGTTGG TGGATAACCC TAAGCAGCAT CCAGAGGGCG ATTTTGCCCT GAGGGATGGC
AAGGTGAATG ATGAGGACGA GCCTAAGCTG ACTTTTTCTG GCATGGCCAT CTATCATCCG
CGTTTCTTCG TCGGTACCTC GAATGGCCGT TTCGGCCTGG CGCCGCTATT GAGAGCCAAG
ATGCAGCAAG GGCTTATTGG CGGCGAGCAT TACCCGCACC TCTGGTGCGA TGTGGGCACG
CTGGAGAGGC TTGAGTCACT GGACGCCGAG TTAAGGGCGG CACAATCAAA CACTGGGGCG
ACACTTTCAC ACACTAAGGT TGTTAGATGA
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| Protein sequence | MKAMILAAGR GERLRPLTDT LPKPLAEVAG KPLIVYHIER LAALGITEIV INHAWLGHKL
EASLGDGSAW GVSISYSPET EALETGGGIK QALPLLGDEP FLVLNGDVYI DSLPTVKGLP
LDAALNTAKI AELMSEQEAY LWLVDNPKQH PEGDFALRDG KVNDEDEPKL TFSGMAIYHP
RFFVGTSNGR FGLAPLLRAK MQQGLIGGEH YPHLWCDVGT LERLESLDAE LRAAQSNTGA
TLSHTKVVR
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