| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0880 |
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| Symbol | pdxA |
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| ID | 4920811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 999112 |
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| End bp | 1000110 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162413 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_001093011 |
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| Protein GI | 127511814 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.506596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.634063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGACTA AACGCATCGC CATCACACCG GGAGAACCTG CCGGTGTGGG CCCAGACTTA
GTCATTCAAC TTGCTCAGCG CGCTTGGCCC GCTGAGCTTG TTGTTTGTGC CGACCCCACT
TTGCTGACCA GCCGCGCCAA GCAGATCGGC TTGCCGATCC AGCTGCGTCC CTTCCAGCCC
AATCAGGCGC CTAAGCCGCA GGAAGCTGGT ACCCTGACCA TAGTGCCCTT CCCCCTGGTA
AAAGAAGCAG TGTGCGGTAA GCTCGATGAA CAGAACAGCA GCTATGTGAT CGACACCCTG
GCCTATGCCG GTGAAAAGAA CATGAATGGC GAGTTCGACG CCGTGGTGAC AGGCCCTGTC
CACAAAGGGA TCATCAACCA GGCGGGTATC CCCTTTAGCG GTCATACCGA GTTCTTTGCC
CACCAGGCCA ACTGTCAGGA TGTGGTGATG CTGCTCGCAG CCCCAGGCCT GCAGGTGGCG
CTGGTCACCA CACATATTCC GCTGGCCTAT GTGTCTAAGG CGATCACCCG TGACCGTCTG
CATCAGATCA TCAAGATCTT GCACAAAGAT CTGGTGACTA AGTTTGCTCT GGATGATCCT
AAGATCTATG TCTGTGGCCT CAACCCCCAT GCGGGCGAAG ATGGCCACCT GGGCCGCGAA
GAGATCGATG TGATCATTCC CGCGCTCAAC GAGTTGCGTG AGCAAAACAT GAATATCGTC
GGGCCACTGC CTGCCGATAC CCTGTTCCAG CCAAAGTATC TGGAAGATGC CGACGTGATC
CTCGCCATGT ATCACGATCA GGGACTGCCG GTACTGAAAT CCCAAGGCTT TGGCAGCTCG
GTCAATATCA CCCTAGGCCT GCCCTACATC CGCACCTCGG TCGACCATGG TACGGCACTG
GAGCTGGCCG GCACTGGCAA AGCCGACATC GGCAGTTTTG TCTGCGCGCT AAACAAGGCT
ATCGAACTAG CCACCAAGAA TGAGTCACTT AAAGAGTAG
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| Protein sequence | MTTKRIAITP GEPAGVGPDL VIQLAQRAWP AELVVCADPT LLTSRAKQIG LPIQLRPFQP
NQAPKPQEAG TLTIVPFPLV KEAVCGKLDE QNSSYVIDTL AYAGEKNMNG EFDAVVTGPV
HKGIINQAGI PFSGHTEFFA HQANCQDVVM LLAAPGLQVA LVTTHIPLAY VSKAITRDRL
HQIIKILHKD LVTKFALDDP KIYVCGLNPH AGEDGHLGRE EIDVIIPALN ELREQNMNIV
GPLPADTLFQ PKYLEDADVI LAMYHDQGLP VLKSQGFGSS VNITLGLPYI RTSVDHGTAL
ELAGTGKADI GSFVCALNKA IELATKNESL KE
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