| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0847 |
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| Symbol | |
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| ID | 4923656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 969735 |
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| End bp | 970985 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162380 |
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| Product | Rh family protein/ammonium transporter |
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| Protein accession | YP_001092978 |
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| Protein GI | 127511781 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0004] Ammonia permease |
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| TIGRFAM ID | [TIGR00836] ammonium transporter
[TIGR03644] probable ammonium transporter, marine subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.105757 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGAGT TAGTAACACT AGGTGCGACA GTATCTGAGT TGAAGTTTGC TCTCGACACC
TTTTATTTCT TGATCTCAGG CGCGCTGGTG ATGTGGATGG CAGCTGGGTT TGCCATGTTG
GAAGCGGGTC TGGTGCGCTC CAAGAACACC ACAGAGATCT TAACCAAGAA CGTCTGTCTC
TACTCCATCG CCTGTATCAT GTATCTGGTG GTGGGTTACA ACATTATGTA TGTGGATAAC
GCCGAGGGTG GCTGGTTGCC ATCGTTTGCT AGCCTCATCG GTGCTCAGGC AAGCGATGCC
GACCATGCGC TGGAATCGGA TTTCTTCTTC CAGGTGGTGT TTGTGGCAAC CGCTATGTCT
ATCGTCTCTG GCGCCGTTGC CGAGCGTATG AAGCTGTGGG CCTTCCTGAT CTTCTCTGTG
GTAATGACTG GGGTTATCTA TCCTGTCGAA GGCTACTGGA CCTGGGGCGG CGGTTTCCTC
TCTGAGGCTG GGTTTGTCGA CTTCGCCGGT AGTGGCATAG TACACATGGC GGGCGCTGCG
GCGGCTATCT CGGGCGTCTT GTTACTCGGC GCTCGTAAGG GTAAGTATGG CCCTAACGGT
CAGGTGAATC CTATCCCTGG TTCTAACCTG CCGATGGCAA CCTTAGGCAT GTTCATCTTG
TGGATGGGTT GGTTCGGCTT TAACGGTGGC TCTCAGCTTT TGGTGTCTGA TGCCGAGAAC
GCGTCGGCGG TGGCGAAGAT CTTCGTTAAC ACCAACTCTG CAGCCGCCTT CGGCGCCGTC
TCTGCCCTGG TGGTCTGTAA GATGGTATGG GGTAAGGCGG ACTTGACCAT GATCTTAAAC
GGCGCCTTGG CGGGCCTGGT GGCTATCACC GCAGATCCTT TGTCGCCATC ACTGCCTCTG
GCCGGAGTTA TCGGCATGGT TGCCGGCGGT CTGGTGGTCT TCTCCATCGT GATGTTCGAC
AGAGTAAAGA TTGACGATCC TGTCGGTGCT ATTTCGGTGC ACGGTGTTGC CGGCCTGTTC
GGTGTGATGC TGGTGCCGCT GTCAAATGCC GATGCGACAG TCTTGGGTCA GCTCTATGGC
GCCTCGGTCA TCTTCGCCTG GGTATTCGGG GTTTCCTTCG CGGCCTGGTA TATCCTCAAG
ATCACCATGG GGATCCGTGT CTCCGAAGAG GAAGAGTATA ACGGTATGGA TGCATCGGAT
TGCGGTATCG ATGCTTACCC AGAGTTTGTC TCACTCAAGA GCGCCAGTTA A
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| Protein sequence | MEELVTLGAT VSELKFALDT FYFLISGALV MWMAAGFAML EAGLVRSKNT TEILTKNVCL
YSIACIMYLV VGYNIMYVDN AEGGWLPSFA SLIGAQASDA DHALESDFFF QVVFVATAMS
IVSGAVAERM KLWAFLIFSV VMTGVIYPVE GYWTWGGGFL SEAGFVDFAG SGIVHMAGAA
AAISGVLLLG ARKGKYGPNG QVNPIPGSNL PMATLGMFIL WMGWFGFNGG SQLLVSDAEN
ASAVAKIFVN TNSAAAFGAV SALVVCKMVW GKADLTMILN GALAGLVAIT ADPLSPSLPL
AGVIGMVAGG LVVFSIVMFD RVKIDDPVGA ISVHGVAGLF GVMLVPLSNA DATVLGQLYG
ASVIFAWVFG VSFAAWYILK ITMGIRVSEE EEYNGMDASD CGIDAYPEFV SLKSAS
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