| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0837 |
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| Symbol | |
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| ID | 4921128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 960198 |
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| End bp | 961607 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162370 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001092968 |
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| Protein GI | 127511771 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.150077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACACC AAAGCAGCCC CCATAACCGA GTCTCAAGTC GATACCGCGC GGCATTTGCC
GGCGCGCTCT TGTCGCTCAC CCTATCGGGC TGCGCCTTTA ACAGCGTGTT CATCAGCTAC
CCCTCTCAGT TGGCACCGGT GAAGGCCGAG CTCGGCAGGC AAGGCGATGC CGCCCTCTAT
CGACAGTTCG ACGATGCCAT CACGGGACAA GATGGGCTGC TGTACGCCCA GGAAGCGGGG
CGTATCGCCC AGATCACCGG CAACTTCGAG GCCAGCAAAG CCTATTACCG GCAGGCGGTC
GATGCCTACC AGAAGTTTGA TGAGCAGGCG GTGATCAGCG CATCCGACCT TGGCGCCACC
GCCAGCAGTT TGTTTATCAA CGACAATGTG ATCCCCTATC GCGGCCCAGG TTATGAGCGC
ATCATGCTGC ACCAATATCA GGCCTTAAAC TATCTCTTTA GCCGAGACAG TCAGGGGGCA
CTGGTGGAGG TCAGGCGCAG CAACGAGCTA CAACAGAGCG AGCAGGCCAG ATACCAGAAA
TCCCAGGCCT CGGTGCAGGC GATGGCCAAC GGCACCATAG ACGCCGAGGT CAATCGACTC
GGGCAGGCGG CAGGCACCAC CACTAGTTCC TTCCTCAACG CCTATAGTTA CTACACCACA
GGCCTGCTGC ATGAGCTGCT AGGGGAAGAG AACGACGCCT TCATCGATTA TCGCAAGGCG
GCGCAGATAA GCCCTGACAA CCCCTATCTG CAGCAAGATC TGGTGCGTCT GGCCAAGAAA
CTGGCCATGC CACAGTATGA AGAGTTTAAG CGTCGTTGGG GCGACGCCAA GCTGGCAAAG
GCAGGACAGG GCCAGGTGGT GATCCTGCTC GAGCGGGGAT TTGTCCCCGA GAAGCAAAGC
TTTACCGTGC CGTTTCGTAT CCACGGCAAC TGGCAGACAG CATCCCTGGC CACCTATGCC
CCGGGCAGGG TAAGCGCGCC TCAAGGGGAG ATCGTCGGCC TAGGCACAGT GCTACAAACG
GCGCCACTCG CCAATATCGA CGCCCTGGCG ATCACCGCCC TCAAGGAGGA GCTCCCCAGC
GCCCTGTTTC GCCAGGCCGC GAGGATCTAC GCCAAGGCAG AGATGGCCCG CAGCGTGCGC
AGTGAATCTA AGCGGCGCAA TGATGAGTTC GATGCCGGCG CCATCGCCAT GCAGATCTTT
AACGTGGTCA CAGAGCAGGC CGACAGGCGT AGCTGGTTGA CCCTGCCCAA GCAGGCACAG
TTAGGACGGC GTTATCTGGA TGCGGGCCAG TATCAAATCC GCCTGGGGCA GTCCCAGACG
CAAGCGATTG ACGTACAAAG CGATAAAACC ACATTAATTT GGATAATTGA GACTGGTAAT
TTCACCCGTT TTTATTCAAT AATCATCTAA
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| Protein sequence | MPHQSSPHNR VSSRYRAAFA GALLSLTLSG CAFNSVFISY PSQLAPVKAE LGRQGDAALY
RQFDDAITGQ DGLLYAQEAG RIAQITGNFE ASKAYYRQAV DAYQKFDEQA VISASDLGAT
ASSLFINDNV IPYRGPGYER IMLHQYQALN YLFSRDSQGA LVEVRRSNEL QQSEQARYQK
SQASVQAMAN GTIDAEVNRL GQAAGTTTSS FLNAYSYYTT GLLHELLGEE NDAFIDYRKA
AQISPDNPYL QQDLVRLAKK LAMPQYEEFK RRWGDAKLAK AGQGQVVILL ERGFVPEKQS
FTVPFRIHGN WQTASLATYA PGRVSAPQGE IVGLGTVLQT APLANIDALA ITALKEELPS
ALFRQAARIY AKAEMARSVR SESKRRNDEF DAGAIAMQIF NVVTEQADRR SWLTLPKQAQ
LGRRYLDAGQ YQIRLGQSQT QAIDVQSDKT TLIWIIETGN FTRFYSIII
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