| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0836 |
|---|
| Symbol | |
|---|
| ID | 4921316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 959579 |
|---|
| End bp | 960172 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640162369 |
|---|
| Product | membrane lipoprotein lipid attachment site |
|---|
| Protein accession | YP_001092967 |
|---|
| Protein GI | 127511770 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
|---|
| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0143317 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TCAACCTCAT TTTTATCATC GCCGTGGCGA TTGGCCTGGC GGGCTGTCAA
TCTAAGGTGC AGTACGGTGA TGCAACTGAA GTCGAAACCG TTAATGAAAA CTTCGGTTCT
ACGGATCTTC AGGCGATCAC TGCCAAGATG GTCGACAGCA TGCTGAGCTT CCCGCCAGTG
GTCGCCATGA CAGCCAAAGA TCGTCCCGTC ATCTTCGTCG ACAAGATTAA GAACAAGACC
TCAGAGCATA TCGACACCGA ATCGGTTACC GACTCCATCA GCAACAAGCT GCTGCGCTCA
GGTAAGTTCC GCTTCATCGA CATGACTAAG GTCGACACGG TACGCAAGCA ACTGGATTAT
CAAAACAATG CCGGCATGGT CGACCCATCG ACCGCCATCA ACTTCGGCCG TCAGATCGGT
GCTCAGTATA TGCTGTACGG CAACCTGTCG AGCATAGTTA AGCAAGATGG CAGCACTAAG
GATGTCTACT ACAAGATGAC CATGCGCCTG ATGGATCTGG AAACCGGCCT GATCGAATGG
TCTGACGAGA AAGAGATCCG CAAGACCAAG TCGAAGTCTT TCCTCGGCAT GTAA
|
|---|
| Protein sequence | MKKFNLIFII AVAIGLAGCQ SKVQYGDATE VETVNENFGS TDLQAITAKM VDSMLSFPPV
VAMTAKDRPV IFVDKIKNKT SEHIDTESVT DSISNKLLRS GKFRFIDMTK VDTVRKQLDY
QNNAGMVDPS TAINFGRQIG AQYMLYGNLS SIVKQDGSTK DVYYKMTMRL MDLETGLIEW
SDEKEIRKTK SKSFLGM
|
|---|
| |