| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0827 |
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| Symbol | |
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| ID | 4920580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 950060 |
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| End bp | 950707 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162360 |
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| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
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| Protein accession | YP_001092958 |
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| Protein GI | 127511761 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGC AAATAAGAGA GAAGTTGGCA CTGGGTATTC TGCTGCTTTT GGGCTTAACC
GCCTGCGGCG GTGAAGAGGG CAGCAATGGG GCGATAGTCA ATCCGCCGGT GACCGGCCCC
GTGCCCGAGA TGAGCATAGA CGCCTGCTTC ACCATGATCA CGAGTCTGGG GGAGGTTGGG
TTAGGCATCG ATAGCCGCCA TACGCCGCAA TCGGCCGCCA ACTTCATCGG CTATGTCGAC
GACGGCTTTT ACGACGGTAC CCTGATCCAC AGGGTGATCC ACAACTTCAT CATCCAGGGG
GGCGGATTTA CCTCTGGCAT GGTGCCTAAG CCCGGCAAGG CGCCCATCAA AAATGAGGCC
AGCGTAGGCT TTAGCAACCT CAGGGGCACC CTGGCCATGG CGCGCGCCCG TCAGAGCGAT
TCGGCAACCT CGCAGTTTTT CATCAACACC TTAGACAATC CGCAGCTGGA TTATAGCGCC
AGCAGCGAAG GCTACGCCGT GTTTGGCAGG GTGTTGTCTG GCATGGAGGT GGTGGATCAG
ATTGGCATAG TCGCCACCAC CCGGGTGGGG GATTATAGCG ACGTGCCGCT GGAGGAGATA
GTGATCGAAC GTATCGCCCC CAGCGAGTGC CCTATGCTGG AAGAATGA
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| Protein sequence | MKKQIREKLA LGILLLLGLT ACGGEEGSNG AIVNPPVTGP VPEMSIDACF TMITSLGEVG
LGIDSRHTPQ SAANFIGYVD DGFYDGTLIH RVIHNFIIQG GGFTSGMVPK PGKAPIKNEA
SVGFSNLRGT LAMARARQSD SATSQFFINT LDNPQLDYSA SSEGYAVFGR VLSGMEVVDQ
IGIVATTRVG DYSDVPLEEI VIERIAPSEC PMLEE
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