| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0825 |
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| Symbol | |
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| ID | 4920574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 948036 |
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| End bp | 948695 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162358 |
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| Product | ribose-5-phosphate isomerase A |
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| Protein accession | YP_001092956 |
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| Protein GI | 127511759 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0120] Ribose 5-phosphate isomerase |
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| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAG ATGAAATGAA AAAAGCCGCC GGATGGGCCG CGCTCGAGTA TGTAGAGAAA
GACAGTATTG TCGGCGTGGG TACCGGCTCG ACCGTTAACC ACTTTATCGA TGCACTGGCC
ACTATGAAGG CCGATATCGA AGGCGCAGTG TCTAGCTCTG AGGCCTCGAC CGAGAAGATG
AAGGCGCTGG GGATCCCGGT ATTCGACCTG AACTCTGTCG ATCAGCTCTC TGTCTATGTC
GATGGCGCCG ACGAGATCAA CGGCCACATG GACATGATCA AGGGTGGCGG AGCCGCGCTG
ACCCGCGAGA AGATTGTCGC CGCCGTGGCC GACAAGTTCG TCTGCATCGT GGATAACACT
AAGGAAGTCG AGGTATTGGG CGAGTTCCCG CTGCCGGTAG AAGTGATTCC TATGGCACGT
TCTTACGTGG CCCGCGAGCT GGTCAAATTA GGCGGTGACC CTGTCTACCG TGAGGGCGTA
GTCACAGATA ACGGCAACGT GATCCTGGAT GTCTACAACA TGAAGATCTT CAATCCAAAA
GCGCTTGAAG AGCAGATCAA TCAGATCGTT GGTGTGGTCA CCAACGGCCT GTTCGCCAAC
CGCGGCGCCG ACGTCCTGCT GGTCGGCACC CCTGAAGGCG TAAAGACGGT TAAGCCATAG
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| Protein sequence | MTQDEMKKAA GWAALEYVEK DSIVGVGTGS TVNHFIDALA TMKADIEGAV SSSEASTEKM
KALGIPVFDL NSVDQLSVYV DGADEINGHM DMIKGGGAAL TREKIVAAVA DKFVCIVDNT
KEVEVLGEFP LPVEVIPMAR SYVARELVKL GGDPVYREGV VTDNGNVILD VYNMKIFNPK
ALEEQINQIV GVVTNGLFAN RGADVLLVGT PEGVKTVKP
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