Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0813 |
Symbol | |
ID | 4923726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 935718 |
End bp | 938231 |
Gene Length | 2514 bp |
Protein Length | 837 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162346 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001092944 |
Protein GI | 127511747 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.461679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACACTCG GTCGTCGCTC TCGGAGTAGG ATAGTGATAG ATATCAAGAT TCCAGATGAA GCGTTACAAG ATTGGCAGGA AGCGTTAGAG ACCCTAGCCC AGGCGTTTGA TGGCAGTCTT TTCCTGTTAG CCCTCACCGC CAGCGATGGT CTGACGCCAC AGCTTAGCCT GTGCGATGAC AATCAGGTCC ATCGCCAGAG TGTCGCCCAG CTTTGCGCCC AGGGACTCAG CCTGTTTCGA GACTATATCG AACATCCCCA TCATCCCCGT GAACCTGTCG ATGTCGGCGG CATCATACTG CATCCGCTCT TCTGGCCTTC CCAGGCCCTC TATGGCGCCC TGTGTCTGGT GCCAAACGAA CAAGCCAACC ACAATAAGCG GCTAAATACT CAGGTCAAGC TGACCTGTCA GGCGATGCAA TATGCCCTGA TTAACCTCTA TCAGACCCAT CGCCAGCAGT TAATAGAGAT AGCGCCGCAA GCGGCGCCGA ATGTGGATCT GCAACTCTTC ATCGACAGCC TGCAGGAGCA TGTGTGGATG AAGGATGTGG CGGGGCGCTA TGTGCTGATC AACCACAGCG TCGAGATCGC CTGGGGGCGT AGCAAAGAGC AGCTGCTCAA TCGCACCGAC GATGAGATCT TCTCCCCCGA GCTGGCCGAA GAGTTTGTTC AGGGGGATTA TGAATCAATC GTGCGCGGCG TGCAGGTGAC TGCCGCCGAG TGCGAGGCTA AAGATATCGA CCAGTCCAAC TCCTGGCTGG AGACCACTAA GGTCCCGGTC GTCTCGCCCG ACGGCACTCT GGAGGGAGTG ATCGGCATCT CCCGTAACAT CACCTCCCAT AAGGCGGCCC AGGAACAGCT GGAGCTGGCG GCCAACATCT TCGAAAACTC GGTGGAAGGT GTGGTGATCA CCGATGCCAG CGGCAATATC ATCGAGGTTC ATGGCGCCTT TACCGAGATC ACCGGCTATA GCCGCGACGA GGTGCTGGGG GAAAATCCAC GCATCTTAAA TTCCGGCCGT CACGACAAGG CCTTCTTCGA GCGCCTGTGG CGCTCGTTGC TGACCAACGG CAAGTGGCAC GGTGAGATCT GGAACCGCCG TAAGAGCGGC GCCATCTATC CAGAGCAACT CACCATCAGC TCCATGTATG GCGACGATCA TCAGGTGCGC TACTTCGTCG CCGTGTTTGC CGATATCTCG GCCCAGAAGC AGAGCGAGAA GGAGCTGGCG CGGCTGGTGT ACCACGACCC GCTGACCAAG TTGCCTAACC GCATGATGCT GTCGGCCAAC CTGGAGCAGG AGCTGAGACA CGCCGCCCGT GAAGAGACGG AGCTGGCGCT GATCTTCATC GACGTGGATC TGTTTAAACA TATCAATGAC AGCTACGGCC ATGTGACCGG CGATGCCATC TTGGTGGAGG TCGCCAGACG TCTGGGACAG AAGCTGGGGG AAGAGGCGAC CCTGGCCAGG CTGGGCAGTG ATGAGTTTAT CGCCGTCCTG CCCCATGTGG AGAGTGACGA CAGCGTCTCC CTCATGGTGA GTCGACTGCG CGAAGCCTTC GATGCGCCCT TCTTGCTGGA TGATGAAGGC AGCGTGCGCC TCACCGCCAG CATGGGGGTG GCCATCTATC CGGGTGATGG CGAGAGCGGC GACACCCTGC TGCGTAACGC CGACACCGCC ATGCACAGGG CCAAGGCCAA TGGCCGCAAC AACTACGCCT TCTATACTCA ATCTCTGACC CTGGCTTCGG TGGAGCATCT TAAGCTACAG AGTGCGCTGC ACGATGCCAT CAACAAGGAT GCCTTCTATC TGGTGTATCA GCCCAAGTTG GCGCTGGGCA CGGGTCAGTG TGTCGGCTTC GAGGCGCTGC TGCGCTGGGA AGACCCACAG CTTGGCACTA TCTCGCCGGC CATCTTCATC CCTGTGGCAG AAAATATAGG CCTGATCAAC GAGATAGGTC TCTGGGTGCT GAAACAGGCG GCGACTCAGG GGGCTCAATG GTTAGCCGAG GGCAAGCGCT TTGGTCGCAT CTCGGTGAAC GTGGCCGGGC CTCAGTTGCA GCAGAAACAG TTTTGCGCCC AGGTGAAACG CGTGCTCGAC GAGGCGGGAC TGCCGCCCGA GTATCTGGAG CTTGAGGTCA CCGAGAGCTG CATGATGTCC GATCCCCTGG CGGTGATCGA GGTGCTTAAA CAATTGGGTG AGCTCGGGGT CGAGCTGTCG GTGGATGATT TCGGGACCGG CTATTCGTCG CTGAACTACC TGAAGCGTCT GCCCATACAT AAGCTGAAGA TAGATCAGTC CTTCATTCGC GATATTCCCA GAGACGGTAA CAACACGGCA ATCGCCAAGG CGGTGATCGC CCTTGGCCAT GCGCTGAATC TCTGCATCAT TGCCGAGGGG GTGGAGACGC CGGAGCAGGC GGCCTTCCTC GAGGCGGCGG GGTGCGATCA GGCCCAGGGC TATCTCTACA GCAAGCCCAG AATGGTCGAG GAGCTAGCCG AGTTCTTAGG TTAG
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Protein sequence | MTLGRRSRSR IVIDIKIPDE ALQDWQEALE TLAQAFDGSL FLLALTASDG LTPQLSLCDD NQVHRQSVAQ LCAQGLSLFR DYIEHPHHPR EPVDVGGIIL HPLFWPSQAL YGALCLVPNE QANHNKRLNT QVKLTCQAMQ YALINLYQTH RQQLIEIAPQ AAPNVDLQLF IDSLQEHVWM KDVAGRYVLI NHSVEIAWGR SKEQLLNRTD DEIFSPELAE EFVQGDYESI VRGVQVTAAE CEAKDIDQSN SWLETTKVPV VSPDGTLEGV IGISRNITSH KAAQEQLELA ANIFENSVEG VVITDASGNI IEVHGAFTEI TGYSRDEVLG ENPRILNSGR HDKAFFERLW RSLLTNGKWH GEIWNRRKSG AIYPEQLTIS SMYGDDHQVR YFVAVFADIS AQKQSEKELA RLVYHDPLTK LPNRMMLSAN LEQELRHAAR EETELALIFI DVDLFKHIND SYGHVTGDAI LVEVARRLGQ KLGEEATLAR LGSDEFIAVL PHVESDDSVS LMVSRLREAF DAPFLLDDEG SVRLTASMGV AIYPGDGESG DTLLRNADTA MHRAKANGRN NYAFYTQSLT LASVEHLKLQ SALHDAINKD AFYLVYQPKL ALGTGQCVGF EALLRWEDPQ LGTISPAIFI PVAENIGLIN EIGLWVLKQA ATQGAQWLAE GKRFGRISVN VAGPQLQQKQ FCAQVKRVLD EAGLPPEYLE LEVTESCMMS DPLAVIEVLK QLGELGVELS VDDFGTGYSS LNYLKRLPIH KLKIDQSFIR DIPRDGNNTA IAKAVIALGH ALNLCIIAEG VETPEQAAFL EAAGCDQAQG YLYSKPRMVE ELAEFLG
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