Gene Shew_0813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0813 
Symbol 
ID4923726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp935718 
End bp938231 
Gene Length2514 bp 
Protein Length837 aa 
Translation table11 
GC content58% 
IMG OID640162346 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001092944 
Protein GI127511747 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.461679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACACTCG GTCGTCGCTC TCGGAGTAGG ATAGTGATAG ATATCAAGAT TCCAGATGAA 
GCGTTACAAG ATTGGCAGGA AGCGTTAGAG ACCCTAGCCC AGGCGTTTGA TGGCAGTCTT
TTCCTGTTAG CCCTCACCGC CAGCGATGGT CTGACGCCAC AGCTTAGCCT GTGCGATGAC
AATCAGGTCC ATCGCCAGAG TGTCGCCCAG CTTTGCGCCC AGGGACTCAG CCTGTTTCGA
GACTATATCG AACATCCCCA TCATCCCCGT GAACCTGTCG ATGTCGGCGG CATCATACTG
CATCCGCTCT TCTGGCCTTC CCAGGCCCTC TATGGCGCCC TGTGTCTGGT GCCAAACGAA
CAAGCCAACC ACAATAAGCG GCTAAATACT CAGGTCAAGC TGACCTGTCA GGCGATGCAA
TATGCCCTGA TTAACCTCTA TCAGACCCAT CGCCAGCAGT TAATAGAGAT AGCGCCGCAA
GCGGCGCCGA ATGTGGATCT GCAACTCTTC ATCGACAGCC TGCAGGAGCA TGTGTGGATG
AAGGATGTGG CGGGGCGCTA TGTGCTGATC AACCACAGCG TCGAGATCGC CTGGGGGCGT
AGCAAAGAGC AGCTGCTCAA TCGCACCGAC GATGAGATCT TCTCCCCCGA GCTGGCCGAA
GAGTTTGTTC AGGGGGATTA TGAATCAATC GTGCGCGGCG TGCAGGTGAC TGCCGCCGAG
TGCGAGGCTA AAGATATCGA CCAGTCCAAC TCCTGGCTGG AGACCACTAA GGTCCCGGTC
GTCTCGCCCG ACGGCACTCT GGAGGGAGTG ATCGGCATCT CCCGTAACAT CACCTCCCAT
AAGGCGGCCC AGGAACAGCT GGAGCTGGCG GCCAACATCT TCGAAAACTC GGTGGAAGGT
GTGGTGATCA CCGATGCCAG CGGCAATATC ATCGAGGTTC ATGGCGCCTT TACCGAGATC
ACCGGCTATA GCCGCGACGA GGTGCTGGGG GAAAATCCAC GCATCTTAAA TTCCGGCCGT
CACGACAAGG CCTTCTTCGA GCGCCTGTGG CGCTCGTTGC TGACCAACGG CAAGTGGCAC
GGTGAGATCT GGAACCGCCG TAAGAGCGGC GCCATCTATC CAGAGCAACT CACCATCAGC
TCCATGTATG GCGACGATCA TCAGGTGCGC TACTTCGTCG CCGTGTTTGC CGATATCTCG
GCCCAGAAGC AGAGCGAGAA GGAGCTGGCG CGGCTGGTGT ACCACGACCC GCTGACCAAG
TTGCCTAACC GCATGATGCT GTCGGCCAAC CTGGAGCAGG AGCTGAGACA CGCCGCCCGT
GAAGAGACGG AGCTGGCGCT GATCTTCATC GACGTGGATC TGTTTAAACA TATCAATGAC
AGCTACGGCC ATGTGACCGG CGATGCCATC TTGGTGGAGG TCGCCAGACG TCTGGGACAG
AAGCTGGGGG AAGAGGCGAC CCTGGCCAGG CTGGGCAGTG ATGAGTTTAT CGCCGTCCTG
CCCCATGTGG AGAGTGACGA CAGCGTCTCC CTCATGGTGA GTCGACTGCG CGAAGCCTTC
GATGCGCCCT TCTTGCTGGA TGATGAAGGC AGCGTGCGCC TCACCGCCAG CATGGGGGTG
GCCATCTATC CGGGTGATGG CGAGAGCGGC GACACCCTGC TGCGTAACGC CGACACCGCC
ATGCACAGGG CCAAGGCCAA TGGCCGCAAC AACTACGCCT TCTATACTCA ATCTCTGACC
CTGGCTTCGG TGGAGCATCT TAAGCTACAG AGTGCGCTGC ACGATGCCAT CAACAAGGAT
GCCTTCTATC TGGTGTATCA GCCCAAGTTG GCGCTGGGCA CGGGTCAGTG TGTCGGCTTC
GAGGCGCTGC TGCGCTGGGA AGACCCACAG CTTGGCACTA TCTCGCCGGC CATCTTCATC
CCTGTGGCAG AAAATATAGG CCTGATCAAC GAGATAGGTC TCTGGGTGCT GAAACAGGCG
GCGACTCAGG GGGCTCAATG GTTAGCCGAG GGCAAGCGCT TTGGTCGCAT CTCGGTGAAC
GTGGCCGGGC CTCAGTTGCA GCAGAAACAG TTTTGCGCCC AGGTGAAACG CGTGCTCGAC
GAGGCGGGAC TGCCGCCCGA GTATCTGGAG CTTGAGGTCA CCGAGAGCTG CATGATGTCC
GATCCCCTGG CGGTGATCGA GGTGCTTAAA CAATTGGGTG AGCTCGGGGT CGAGCTGTCG
GTGGATGATT TCGGGACCGG CTATTCGTCG CTGAACTACC TGAAGCGTCT GCCCATACAT
AAGCTGAAGA TAGATCAGTC CTTCATTCGC GATATTCCCA GAGACGGTAA CAACACGGCA
ATCGCCAAGG CGGTGATCGC CCTTGGCCAT GCGCTGAATC TCTGCATCAT TGCCGAGGGG
GTGGAGACGC CGGAGCAGGC GGCCTTCCTC GAGGCGGCGG GGTGCGATCA GGCCCAGGGC
TATCTCTACA GCAAGCCCAG AATGGTCGAG GAGCTAGCCG AGTTCTTAGG TTAG
 
Protein sequence
MTLGRRSRSR IVIDIKIPDE ALQDWQEALE TLAQAFDGSL FLLALTASDG LTPQLSLCDD 
NQVHRQSVAQ LCAQGLSLFR DYIEHPHHPR EPVDVGGIIL HPLFWPSQAL YGALCLVPNE
QANHNKRLNT QVKLTCQAMQ YALINLYQTH RQQLIEIAPQ AAPNVDLQLF IDSLQEHVWM
KDVAGRYVLI NHSVEIAWGR SKEQLLNRTD DEIFSPELAE EFVQGDYESI VRGVQVTAAE
CEAKDIDQSN SWLETTKVPV VSPDGTLEGV IGISRNITSH KAAQEQLELA ANIFENSVEG
VVITDASGNI IEVHGAFTEI TGYSRDEVLG ENPRILNSGR HDKAFFERLW RSLLTNGKWH
GEIWNRRKSG AIYPEQLTIS SMYGDDHQVR YFVAVFADIS AQKQSEKELA RLVYHDPLTK
LPNRMMLSAN LEQELRHAAR EETELALIFI DVDLFKHIND SYGHVTGDAI LVEVARRLGQ
KLGEEATLAR LGSDEFIAVL PHVESDDSVS LMVSRLREAF DAPFLLDDEG SVRLTASMGV
AIYPGDGESG DTLLRNADTA MHRAKANGRN NYAFYTQSLT LASVEHLKLQ SALHDAINKD
AFYLVYQPKL ALGTGQCVGF EALLRWEDPQ LGTISPAIFI PVAENIGLIN EIGLWVLKQA
ATQGAQWLAE GKRFGRISVN VAGPQLQQKQ FCAQVKRVLD EAGLPPEYLE LEVTESCMMS
DPLAVIEVLK QLGELGVELS VDDFGTGYSS LNYLKRLPIH KLKIDQSFIR DIPRDGNNTA
IAKAVIALGH ALNLCIIAEG VETPEQAAFL EAAGCDQAQG YLYSKPRMVE ELAEFLG