| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0812 |
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| Symbol | lysS |
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| ID | 4920766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 933950 |
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| End bp | 935452 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162345 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_001092943 |
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| Protein GI | 127511746 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAC AAACTCAAGA CGAAAACAAG TTAATTGCAG AGCGCCGTGC CAAGTTAGAT
CACGTTCGCG CTTCTTGCCC TGCTAACGGT CACCCGAACA ACTTCGATCG AAAACATAAG
GCTGCCGACA TCCAGGCCGA ATATGGTCAA TACAGCAAGG AAGAGCTGGA AGAGATGAAT
GTCCAGCGCT CTATCGCCGG TCGTATCATG GCTAAGCGTG GCCCCTTCTT GGTTATCCAG
GACGTGAGCG GTCGCATCCA GGCCTATGCC GGTAAAGACG TTCAGAAAGA TCTTAAGGCC
AAGTATCAAG GTCTGGATAT CGGTGACATT ATCGGTGTGA CCGGCCAGCT GCACCTGTCT
GGCAAGGGCG ACCTCTATGT CAACATGGAA GAGTACCAGC TGCTGACCAA GGCGCTGCGT
CCGCTGCCTG AGAAGTTCCA CGGCCTGACT GACCAGGAGA CCCGCTACCG TCAGCGTTAT
GTTGACCTCA TCGTGAACGA AGAGTCACGT GCGGCCTTCA TTATGCGCTC TAAAGTGGTT
ACCGCTATCC GTAACTTCAT GGTAAGCAAA GAGTTTATGG AAGTGGAAAC CCCTATGATG
CACAGCATCC CGGGTGGTGC CTCTGCGCGT CCTTTCATTA CTCACCACAA TGCGCTGGAT
ATCGAGATGT ACCTGCGTAT CGCGCCTGAG CTATACCTCA AGCGTCTGGT GGTTGGTGGT
TTCGAGCGCG TGTTCGAGAT CAACCGTAAC TTCCGTAACG AAGGCCTGTC GCCACGCCAT
AACCCAGAAT TCACCATGAT GGAATTCTAT ATGGCCTATG CCGACTACAA AGATCTGATG
GACCTGACCG AAGAGATGCT CTCTTCGATC GCCAAAGATC TGCTGGGTGA TACCAAGCTG
CCATACGGCG AGCACACTAT CGACTTCGGC GGTCCATACG AGCGTCTGAG CATGCTGGAT
GCGATCAAGA AGTACAACCC AGACAACGAG ACGATTCAGT CTATGACCTA TGAAGAGGTT
AAAGACGTCG AGTTTATGCG TAACCTGGCC AAGAGCCTGG GCATGACTAT CGAGAAGTTC
TGGACCTGTG GTCAGCTGCT GGAAGAGATC TTCGGTGAAA CCGCCGAGCC TAAGCTGATG
CAGCCTACCT TCATCACTGG CTACCCGGCA GATATCTCAC CGCTGGCCCG CCGTAACGAT
GAAAACCACT TCATCACCGA CCGTTTCGAG TTCTTCATCG GCGGTCGCGA AGTGGCCAAC
GGCTTCAGCG AGCTGAACGA TGCGGAAGAT CAAGACAAGC GCTTCAAGGC GCAGGTCGAT
GCTAAAGATG CGGGCGACGA TGAAGCCATG TTCTATGACG CCGACTACAT CACGGCGCTG
GAGCACGGTC TGCCACCGAC TGCCGGTCAG GGTATCGGTA TCGACCGTCT GGTGATGTTG
TTTACCAACA CCCACACCAT TCGTGACGTG ATCCTCTTCC CGGCGATGCG TCCTCAGGGA
TAA
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| Protein sequence | MTEQTQDENK LIAERRAKLD HVRASCPANG HPNNFDRKHK AADIQAEYGQ YSKEELEEMN
VQRSIAGRIM AKRGPFLVIQ DVSGRIQAYA GKDVQKDLKA KYQGLDIGDI IGVTGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR AAFIMRSKVV
TAIRNFMVSK EFMEVETPMM HSIPGGASAR PFITHHNALD IEMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEEMLSSI AKDLLGDTKL
PYGEHTIDFG GPYERLSMLD AIKKYNPDNE TIQSMTYEEV KDVEFMRNLA KSLGMTIEKF
WTCGQLLEEI FGETAEPKLM QPTFITGYPA DISPLARRND ENHFITDRFE FFIGGREVAN
GFSELNDAED QDKRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQG
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