| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0793 |
|---|
| Symbol | |
|---|
| ID | 4923856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 905116 |
|---|
| End bp | 906681 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640162326 |
|---|
| Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | YP_001092924 |
|---|
| Protein GI | 127511727 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
|---|
| TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.599853 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATG CGAATGTGAA AAATCAGCTG ACTACCTATC TGCAAAACCT CAAGCGCCCA
GTTGAACTTG TCGTATCGGC AGATGAGCGT CCTAAAGCAA AAGAGTTATT GTCGCTGGCA
ACCGATATTG CCGCGCTTTC AGAATTAGTG TCATTGACCG AATCCGTGGG TGAGCGTACC
CCGTCGATGA CAGTGACTAG CCCTGACACC GGCAGTCAGA TCCATTTCGC CGGCCTGCCA
ATGGGCCATG AATTTACCTC TCTGGTGCTG GCGTTGCTGC ACACAGGTGG GCATCCGATC
AAGCTCGCAC CCGAAGTGAT AGAGCAGATC CGCGACCTGC CAGGCGAGTA TCGCTTCGAG
ACCTATGTGT CACTCAGCTG TCAAACCTGT CCCGAGGTGG TGCAGGCGCT CAACATGATG
TCGGCGATCA ACCCTAATAT TCAAAACACC ATGATCGATG GCGCCCTGTT CCAGGATGAA
GTGAACGAGC GCAACATCAT GGCGGTACCC TCTGTCTACC TGAACGGCGA GCCGTTTTCT
GTCGGTGGCA TCAGTGTGGT TGAGATCCTC AATAAGCTGG ATGTCAATGC GGCCAGCCGT
CAGGCGGAAA AGCTCAGCCA GAAAGAGGCT TTCGACGTGC TGGTGGTCGG CGGCGGCCCG
GCGGGCGCAT CGGCAGCCAT CTATGCGGCC CGTAAGGGAC TGAGAACCGG CATTCTGGCG
GACAAGTTTG GTGGTCAGGT GGCCGAAACC GTGGGCATCG AAAACTTTAT CTCGGTCAAG
GCGACCGAGG GGCCTAAGCT GGTGGCCAAC CTGGAAGCCC ATGTTCACGA CTATGATGTC
GACATCATGG ACAATCAACG TGCCCTTAGC CTTAAGTCAG GTGAGCTGTT TGAGATCCAG
ACCGAAAGCG GCGCACTGCT GCGCAGCAAG ACTGTACTAC TGGCCACGGG CGCTCGCTGG
CGTGAGATGA ATGTGCCGGG TGAGAAAGAG TATCGCGGCA AAGGCGTCGC CTACTGCCCA
CACTGTGACG GCCCGCTATT TAAGGGCAAG CGCGTGGCTG TGATTGGCGG TGGTAACTCG
GGCATAGAGG CGGCCATAGA TCTGGCCAAT ATCGTCGAGC ATGTTACCGT GCTGGAGTTC
GACAGCAAGC TACGCGCCGA CGAGGTGCTA CAGCGTAAGG CGGCCTCCAT GGGCAATATC
GAGATCATCA CCCAGGCGAT GACCACAGAA GTGGTGGGCG ATGGCACCCG GGTACAAGGC
CTGAACTACA CAGACAGAGC CACGGGCGAG CAGCACCATG TTGCCCTGGC GGGTATCTTT
GTACAGATAG GTCTGGTGCC TAACGCCGAG TGGCTTAAGG GCACGGTAGA TCTTAGCGAA
CGCGGCGAAA TCATCGTCGA TGCTAAAGGC CAGACGTCAT TGCCAGGCGT ATTCGCCGCG
GGCGATGTGA CCAACTCTGC CTTTAAACAG ATCATCATCG CCATGGGCAG CGGCGCGACA
GCCTCTCTGG GCGCCTTCGA TTACCTAATC CGTCTCGGCG AGCCGGCGGA CGCGGAAGCC
GCCTAA
|
|---|
| Protein sequence | MLDANVKNQL TTYLQNLKRP VELVVSADER PKAKELLSLA TDIAALSELV SLTESVGERT
PSMTVTSPDT GSQIHFAGLP MGHEFTSLVL ALLHTGGHPI KLAPEVIEQI RDLPGEYRFE
TYVSLSCQTC PEVVQALNMM SAINPNIQNT MIDGALFQDE VNERNIMAVP SVYLNGEPFS
VGGISVVEIL NKLDVNAASR QAEKLSQKEA FDVLVVGGGP AGASAAIYAA RKGLRTGILA
DKFGGQVAET VGIENFISVK ATEGPKLVAN LEAHVHDYDV DIMDNQRALS LKSGELFEIQ
TESGALLRSK TVLLATGARW REMNVPGEKE YRGKGVAYCP HCDGPLFKGK RVAVIGGGNS
GIEAAIDLAN IVEHVTVLEF DSKLRADEVL QRKAASMGNI EIITQAMTTE VVGDGTRVQG
LNYTDRATGE QHHVALAGIF VQIGLVPNAE WLKGTVDLSE RGEIIVDAKG QTSLPGVFAA
GDVTNSAFKQ IIIAMGSGAT ASLGAFDYLI RLGEPADAEA A
|
|---|
| |