| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0783 |
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| Symbol | |
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| ID | 4921979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 897390 |
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| End bp | 898067 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162316 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001092914 |
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| Protein GI | 127511717 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.202814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00996609 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGATT TCGTGTATGC ACCGCCCACC GAGCCCTGGC TCGAGATCCT CCACGAGGAT
AAAGATATTC TGGTGGTCAA CAAGCCCTCA GGCCTACTTT CCGTGCCTGG CCGTGACCCC
GCCTATTATG ACAGCGTCTA CACCCGCGTC CTGCGCGATC ACCCCAACGC CCAGATAGTT
CACCGTCTGG ATATGGCGAC TTCAGGCATT ATCGTGGTGG CCCTCAGACG CAGCGCTGAG
CGGGAACTTA AGCGCCAGTT TCGCGATCGC GAGACCCATA AGATCTACTA TGCCCGGGTC
GCCGGTCATC TGAAGGCGGA GCAAGGTAGC GTCGATTATC CGCTGATCTG CGACTGGCCC
AACCGCCCGA AACAGAAGGT GGATCATCAA ATCGGTAAGG CATCTAAGAC CCTGTTCGAG
GTCATCAGCC GCGCCAAGCG CTCGACCCTG GTAAAGCTCA CGCCGATCAC AGGTCGCTCT
CACCAGCTGC GCGTACATAT GATGGCCATA GGGCACCCCA TCCTGGGCGA TAACTTCTAC
GCCGACCCGC TGGCCAAACG CCTGGCACCG CGTCTGCTGC TGCATGCCCA GTCGCTGAGC
CTGACCCATC CCTACAGCAA ACAGCCTATG ACCTTCAGCA CGCCAATCCC CTTCACGGAT
GTCACCGAGG AGCAATAG
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| Protein sequence | MSDFVYAPPT EPWLEILHED KDILVVNKPS GLLSVPGRDP AYYDSVYTRV LRDHPNAQIV
HRLDMATSGI IVVALRRSAE RELKRQFRDR ETHKIYYARV AGHLKAEQGS VDYPLICDWP
NRPKQKVDHQ IGKASKTLFE VISRAKRSTL VKLTPITGRS HQLRVHMMAI GHPILGDNFY
ADPLAKRLAP RLLLHAQSLS LTHPYSKQPM TFSTPIPFTD VTEEQ
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