| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0782 |
|---|
| Symbol | |
|---|
| ID | 4923975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 896794 |
|---|
| End bp | 897255 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640162315 |
|---|
| Product | DNA-binding transcriptional regulator AsnC |
|---|
| Protein accession | YP_001092913 |
|---|
| Protein GI | 127511716 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0707861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0088229 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGTT CATTTCAGCG AGATCAGCTC GACAACCAGA TCCTCTCGGC GCTTATGGAA
GAGGCGCGCA CCCCCTTCGC CGAACTGGCC AAACGTTTCG GCGTCAGCGC CGGCACCATA
CATGTGCGGG TAGAGAAGAT GAAACAGGCG GGCATCATCA CGGGCGCCCA GATCACGGTA
AACCCTAAGG CCCTCGGCTA TGACGTCTGC TGTTTTATCG GCATCAACCT CAAGAGCGCC
GGCGACTATC CCGCCGCCAT CGCCAAACTC AATGCCTTAG AAGAGGTCAC CGAGGCCTAC
TACACCACGG GCAACTACAG CATCTTCGTC AAGGTGATGT GTCAGTCGAT CGATGGCCTT
CAGCATGTGC TGATCAACCG CATCCAATCC ATCGATGAGA TCCAATCCAC CGAGACACTC
ATCAGTTTAC AAAATCCTAT CAGCCGCGCC GTGAAGCCTT AA
|
|---|
| Protein sequence | MDSSFQRDQL DNQILSALME EARTPFAELA KRFGVSAGTI HVRVEKMKQA GIITGAQITV
NPKALGYDVC CFIGINLKSA GDYPAAIAKL NALEEVTEAY YTTGNYSIFV KVMCQSIDGL
QHVLINRIQS IDEIQSTETL ISLQNPISRA VKP
|
|---|
| |