| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0772 |
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| Symbol | |
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| ID | 4920676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 881086 |
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| End bp | 882810 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640162305 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_001092903 |
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| Protein GI | 127511706 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.167693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00446395 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGATCCATA AGATAGTGCG CCGCCCCAAG GTAGATGACA GCCATCTGCC GAGTCACCTT
TCCCCCATCT TAAAGCAAGT CTACGCCAGC CGAGGCTGCA CTGTGGACGA CTGCGAGTTG
GCGCTGGCTA ACCTGCTCCG CCCCAATACA CTCAAGGATG TGGATAAGGC CGCGGCCATC
ATCGCCGATG CCATGGCCAA GCAGCAATCG ATTCTAATCA TCGGCGACTT CGACGCCGAC
GGCGCCACCT CCACCAGTGT CTGCCTGCTT GCCCTGCGAA TGATGGGCGC GATTAATGTG
GATTACCTGA TCCCCAACCG CTTCGATTAC GGCTATGGCC TCAGCCCTGA GATAGTTCAG
GTGGCCCAAC AGAAGGGAGC AGAGCTGCTG ATCACCGTCG ATAACGGCAT CTCCTCCATC
GAAGGGGTTG CCGCGGCCAA GGCGCTGGGG ATGCAGGTGG TGATCACCGA CCATCACCTG
CCGGGCAACA GCGTGCCAGA GGCCGATGCG ATAGTGAACC CTAACCAGCT AGGCTGTGGC
TTTGCCAGCA AGGCGATCGC TGGGGTCGGG GTCGCCTTCT ATCTGATGTC GGCTCTGCGC
GCCGAGCTGC GTAGCCGTGG CTGGTATCAG GCGCAGGGCA TACAGGAACC CAATCTCGCC
ACCCTGCTGG ATATCGTCGC CCTGGGCACA GTGGCGGACG TGGTGTCGCT GGATACCAAC
AACCGCATCC TGGTGGACGC CGGTCTCAAG CGGGTGCGCG CCGGACGCTG CCGCCCAGGA
ATTACCGCAC TCTTGGAAGT GGCCAAGCGT AACACCTCCC GCATCGTCGC CTCCGATTTT
GGCTTCGCGG TCGGCCCCAG GCTCAACGCC GCCGGGCGCC TGGACGAGAT GGCCTTGGGG
GTCGAGACCT TACTGTGCGA CGACATGATG CGCGCGCGCC GCATGGCCAG CGAGCTGGAC
GGACTCAACG CCGAGCGGCG CGAGCTGGAA ACCGGCATGC AGCAGGAGGC GCTAAAGAGC
CTGGAGAGTC TGTCGCTTAA TGAGGCCGAG CTGCCCTGGG GGATCGCCCT CTACCAGCAA
GACTGGCACC AAGGGGTGAT CGGCATCCTG GCGTCGCGAA TCAAAGATAA GTATCACAGG
CCGGTGATCG CCTTCGCCGA GGCGGGCGAG GGGGAGATCA AGGGCTCGGC GCGCTCCATC
AAGGGGCTGC ATATGCGCGA CCTGCTGGAG CTTATCAATG CCCGCCATCC CGGAATGATC
ATAAAGTTCG GTGGTCACGC CATGGCCGCG GGCCTGTCCC TGCGCGCCGG TGAGTTCGAG
CGTTTCGCCA AGGCCTATGA TGAGGCGGTG CGCGAACTGC TTGCGCCCGA GCAGCTGACC
GGCGAGATCG TCAGCGACGG CGAACTAAGC CCGGCTCAAC TCAACATGGC ACTGGCCAGG
GAGCTTCGCA GTGCGGGCCC CTGGGGGCAG AACTTCCCCG AGCCGATATT CGACGGAGTG
TTTCGTATCC TGCAACAGAG GATCGTCGGC GAGCGTCACC TCAAACTCGT GCTCGAGAGC
GAATGCGGCC AGACCATGGT GGATGCCATC GCCTTCAACG TGGATCTCAC CACCTGGCCC
GATGCCACCA TCCAATACGC GGAGGTCGCC TATAAGCTGG ATATCAATGA GTTTCGTGGC
AACGAGAGCC TGCAGCTGAT GGTGGAGCAG ATCGAACCTA AGTAG
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| Protein sequence | MIHKIVRRPK VDDSHLPSHL SPILKQVYAS RGCTVDDCEL ALANLLRPNT LKDVDKAAAI
IADAMAKQQS ILIIGDFDAD GATSTSVCLL ALRMMGAINV DYLIPNRFDY GYGLSPEIVQ
VAQQKGAELL ITVDNGISSI EGVAAAKALG MQVVITDHHL PGNSVPEADA IVNPNQLGCG
FASKAIAGVG VAFYLMSALR AELRSRGWYQ AQGIQEPNLA TLLDIVALGT VADVVSLDTN
NRILVDAGLK RVRAGRCRPG ITALLEVAKR NTSRIVASDF GFAVGPRLNA AGRLDEMALG
VETLLCDDMM RARRMASELD GLNAERRELE TGMQQEALKS LESLSLNEAE LPWGIALYQQ
DWHQGVIGIL ASRIKDKYHR PVIAFAEAGE GEIKGSARSI KGLHMRDLLE LINARHPGMI
IKFGGHAMAA GLSLRAGEFE RFAKAYDEAV RELLAPEQLT GEIVSDGELS PAQLNMALAR
ELRSAGPWGQ NFPEPIFDGV FRILQQRIVG ERHLKLVLES ECGQTMVDAI AFNVDLTTWP
DATIQYAEVA YKLDINEFRG NESLQLMVEQ IEPK
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