Gene Shew_0727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0727 
Symbol 
ID4923290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp827575 
End bp828948 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content60% 
IMG OID640162260 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001092858 
Protein GI127511661 
COG category[T] Signal transduction mechanisms 
COG ID[COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGACGC TGCGCACTAA GCTCATCTGG GGCAATGTGA TTGTTAGTCA GCTAGCCCTT 
GCCCTGTTTA TCCTGCTACT CAAGATGCTG GCGCCAGAGC TGTATCAGGA GGTGGCGCCT
GAGCTGATAG TCGCCTGCCT GTTGCTGTCT GGCGGCTTTG CCTGGCTGCT CAGCCGCTGG
CTGACCCGGG GGCTGTCGAC TAGCCTCAAG GCGCTGGAGG TGGGGCTGCT TAACATCAAA
GACAATGATT TCAGCGTGAA CATTCCTGTG ACGGGGGACA GCCAGCTCAA GGCGCTGGCC
AGCCTGTTTA ACGAGTCTGC GGCCGTGCTG CGCCGCGAGC GTCAGTATAT CTATCAGCGT
GAGCTGCTGC TGGATAAGGT GATTCAAAGC TCGCCTAATG TCATGGTGCT GCTGGACGAT
CGCCAGCGCA TCATCTACGC CAACGACGCC GCCCGCCACC TGTTTGCCCA GGGGGCGCGC
ATTGAGGGCA GCATGTTAGA CGAGTTGCTG GACGGCGTCA GCGAGGAGCT GGCCGGCGCG
GTCAACAATC CCAAGGGCGG GCTGTTTACC CTGGCGAGCG TGGAGGAGGG CGGCGAAGAT
GAAACCTGGC ATCTCTCGCG GGGACGCTTC CTGCTCAACG GTCAGTATCA CCATCTCATT
CTGCTCAAGC AGATGACCCG TGAGCTGAAC CGTCAGGAGG TGGCGGTATG GAAGAAGGTG
ATCCGCATCA TCAGCCACGA GCTCAACAAT TCGGTGGCGC CCATCGCTTC TATGGTCAAT
TCGGGCCGCA AGCTCACCGA GCCGCTGGAT GACCCTAAGC TTAAGCTTAT CTTCGACACC
ATAGAGGACA GGACCAGCCA CCTGAGCCAG TTTATCTTCA ATTATGCCCG CTTCGCCAAG
CTTCCCCTGC CCAAGAAGAG CGAGGTGGAT TGGCACAAGT TGGTCACTCA GCTGGCCGAG
CATTTCCGTT TCAGTCTGGT GGGGGAGCTG CCTCGGCGCT GCGGCTATTT CGACCTGATT
CAGCTGGAGC AGGTGCTGCT GAACCTACTC AAGAACGCCC ATGAGTCGGG CTCGCCCGAG
GAGTCGGTAA GCCTAAGCGT CAGGGAGCAA GGCCTGGCGG ATGGCAGCGA CGGTGTGACT
ATTGAGATAA CCGATGAGGG CAGCGGCATG TCGCCGGAGG TATTGACCCA GGCGCTGCTG
CCTTTCTATT CCACCAAGCA GTCGGGTACC GGCCTGGGCC TGCCCTTGTG TAGGGAGATC
ATCGAGGCCC ATGACGGCCG TATCAGTCTG CACAATCGCG AGCACAAGGG GCTGCTGGTG
CGGATCTGGC TGCCCTATGA TCAGGCTCAG CAGCTCGGGC AGGCAAGCGC CTAG
 
Protein sequence
MPTLRTKLIW GNVIVSQLAL ALFILLLKML APELYQEVAP ELIVACLLLS GGFAWLLSRW 
LTRGLSTSLK ALEVGLLNIK DNDFSVNIPV TGDSQLKALA SLFNESAAVL RRERQYIYQR
ELLLDKVIQS SPNVMVLLDD RQRIIYANDA ARHLFAQGAR IEGSMLDELL DGVSEELAGA
VNNPKGGLFT LASVEEGGED ETWHLSRGRF LLNGQYHHLI LLKQMTRELN RQEVAVWKKV
IRIISHELNN SVAPIASMVN SGRKLTEPLD DPKLKLIFDT IEDRTSHLSQ FIFNYARFAK
LPLPKKSEVD WHKLVTQLAE HFRFSLVGEL PRRCGYFDLI QLEQVLLNLL KNAHESGSPE
ESVSLSVREQ GLADGSDGVT IEITDEGSGM SPEVLTQALL PFYSTKQSGT GLGLPLCREI
IEAHDGRISL HNREHKGLLV RIWLPYDQAQ QLGQASA