Gene Shew_0719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0719 
Symbol 
ID4921966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp819519 
End bp820343 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content59% 
IMG OID640162252 
Productperiplasmic binding protein 
Protein accessionYP_001092850 
Protein GI127511653 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGA GGGTTAAGCT GTGGCTGTTG TTGGCCTTGC TGCTGTGTGT GCCTGGGCTT 
AAGGCGGCGC CTGCAAAACG GATCATCGCC CTGTCGCCCC ATGGGGTGGA GATGCTGTTT
AGTATAGGGG CGGGGGACAG TGTAGTCGCG ACCACAGATC ATGCCGATTT TCCCGATGCG
GCCAAGGCGA TCCCGCGGAT CGGCGGCTAC TACGGCATAC AGATAGAGAA AGTTATCGAG
CTCGACCCGG ATCTGATTGT CATCTGGGGC GGCGGCAACA AGCGCGAGGA TATCGAGCGC
CTGACCCAGC TGGGTTATCC CATCTATAAC AGCGACCCTA AGACGTTGGA GGCGGTGGCT
GACGATCTGC TGGCGCTGGG CAAGCTGACC GGCAAGGAGC GCGAAGCGGA GCGGGTGGCC
GAGCAGTACC TTATCGGCCT CAAGGCGCTC AGTAAGGAAA ATCGGGCCAA GGCGGCGGTG
CGGGTCTTCT ATCAGCTCTG GTCAGTGCCT CTGATGACGG TGGCCGAGGG CAGCTGGATA
GAGCAGATTA TCCAGGTCTG CCACGGCGAG AATGTGTTTA GCGACGCGGG GAACGAGTAT
CCCCAGGTGA GCCTGGAGGC CGTGCTGCTC AAGCAACCTC AGGTGATATT GCAGAGTCAG
GATGAGGGCA ATGTGCGCGG CATTGACTGG TCTGCCTGGC AGGAGATCCC GGCGGTGAAG
CAGCGCCACA TCTATCAACT GGATGCCGAC CTATTGCATC GAGCGACACC AAGGGCCATC
TTAGGGATTG AATCTTTGTG CAAGGCCCTG GACAAGGCGA GATAA
 
Protein sequence
MKMRVKLWLL LALLLCVPGL KAAPAKRIIA LSPHGVEMLF SIGAGDSVVA TTDHADFPDA 
AKAIPRIGGY YGIQIEKVIE LDPDLIVIWG GGNKREDIER LTQLGYPIYN SDPKTLEAVA
DDLLALGKLT GKEREAERVA EQYLIGLKAL SKENRAKAAV RVFYQLWSVP LMTVAEGSWI
EQIIQVCHGE NVFSDAGNEY PQVSLEAVLL KQPQVILQSQ DEGNVRGIDW SAWQEIPAVK
QRHIYQLDAD LLHRATPRAI LGIESLCKAL DKAR