Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0719 |
Symbol | |
ID | 4921966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 819519 |
End bp | 820343 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640162252 |
Product | periplasmic binding protein |
Protein accession | YP_001092850 |
Protein GI | 127511653 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGATGA GGGTTAAGCT GTGGCTGTTG TTGGCCTTGC TGCTGTGTGT GCCTGGGCTT AAGGCGGCGC CTGCAAAACG GATCATCGCC CTGTCGCCCC ATGGGGTGGA GATGCTGTTT AGTATAGGGG CGGGGGACAG TGTAGTCGCG ACCACAGATC ATGCCGATTT TCCCGATGCG GCCAAGGCGA TCCCGCGGAT CGGCGGCTAC TACGGCATAC AGATAGAGAA AGTTATCGAG CTCGACCCGG ATCTGATTGT CATCTGGGGC GGCGGCAACA AGCGCGAGGA TATCGAGCGC CTGACCCAGC TGGGTTATCC CATCTATAAC AGCGACCCTA AGACGTTGGA GGCGGTGGCT GACGATCTGC TGGCGCTGGG CAAGCTGACC GGCAAGGAGC GCGAAGCGGA GCGGGTGGCC GAGCAGTACC TTATCGGCCT CAAGGCGCTC AGTAAGGAAA ATCGGGCCAA GGCGGCGGTG CGGGTCTTCT ATCAGCTCTG GTCAGTGCCT CTGATGACGG TGGCCGAGGG CAGCTGGATA GAGCAGATTA TCCAGGTCTG CCACGGCGAG AATGTGTTTA GCGACGCGGG GAACGAGTAT CCCCAGGTGA GCCTGGAGGC CGTGCTGCTC AAGCAACCTC AGGTGATATT GCAGAGTCAG GATGAGGGCA ATGTGCGCGG CATTGACTGG TCTGCCTGGC AGGAGATCCC GGCGGTGAAG CAGCGCCACA TCTATCAACT GGATGCCGAC CTATTGCATC GAGCGACACC AAGGGCCATC TTAGGGATTG AATCTTTGTG CAAGGCCCTG GACAAGGCGA GATAA
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Protein sequence | MKMRVKLWLL LALLLCVPGL KAAPAKRIIA LSPHGVEMLF SIGAGDSVVA TTDHADFPDA AKAIPRIGGY YGIQIEKVIE LDPDLIVIWG GGNKREDIER LTQLGYPIYN SDPKTLEAVA DDLLALGKLT GKEREAERVA EQYLIGLKAL SKENRAKAAV RVFYQLWSVP LMTVAEGSWI EQIIQVCHGE NVFSDAGNEY PQVSLEAVLL KQPQVILQSQ DEGNVRGIDW SAWQEIPAVK QRHIYQLDAD LLHRATPRAI LGIESLCKAL DKAR
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