| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0712 |
|---|
| Symbol | |
|---|
| ID | 4922448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 812368 |
|---|
| End bp | 813342 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640162245 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001092843 |
|---|
| Protein GI | 127511646 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1120] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGCCC CCAATCAGCC ATCACAAACA GAATCACTCC TGTCTCTCGG CGCCAGTGAA
GGATCGAACC TAAGTGCAGG CGATGGCGCC TGCGCGCGCC CGGCGCTGTC GGTGCGGGAT
CTCAGCTGGC GCTGCGGTGA GCGCGCCATC CTCTCTGGGG TCAAGCTGGA TCTGCCAGAG
GGTAAGATGC TGGGGATCAT AGGCCCCAAC GGCGCCGGCA AGTCCAGCCT GCTGCGCTGC
CTCTATCGTT TCCTCACCCC TAGCAGCGGC GAGATCCAAC TGTTTGGTCA GCCAATCGCC
AGCCTGAGCG CCAGGGCCTT TGCCCGCGAG GTGGCCGTGG TGCTGCAAGA CACGCCTCAG
CATTTCGACA TGACCACGGC CCAGCTGGTG GCATTGGGGC TCACGCCACA CAAGGCCGCC
TTCTCCATGA CCACTAAGGC TGACCGCCTG GCGGTGAGTC AGGCCCTGGA AACCGTGGGG
CTCAAGGAGC GCGCCGGACA GACCTACGCC TCCCTGTCCG GGGGCGAGAA GCAGCGGGCG
CTGATTGCCC GCGCCATAGC GCAGCAGCCT AAGCTATTGA TCCTCGATGA ACCCACTAAT
CACCTGGATA TCCGCTATCA GATCCAGATC CTTGAGCTGC TCAAGGCCCT GGGGGTGACC
GTGGTGATCT CGATTCATGA CCTGAATCTG GCCAGCGCCC TGTGCGATCA GCTTTTGCTG
CTGGATCAGG GCAAGGCGGT GGCTCAAGGC TCGCCCAAAC AGGTGCTGAG TGAGGCGCAG
ATCGCCAGGG TATTCTGCGT CTGCTGTCAG GTATCGCCCC ATCCACAGCA CGGTAATCCG
CAGATTAACT ATTTCTATGG CTATCACCTT CACAATGCTG ACCAGAGTGC CCAGCATGGC
AGTAGCAGTG GCAGTGCCAA TGGCCTGGCT GACCAGCCAT TTGAGGCGAA GGAGGCTAAC
CATGACGAGC GCTAG
|
|---|
| Protein sequence | MSAPNQPSQT ESLLSLGASE GSNLSAGDGA CARPALSVRD LSWRCGERAI LSGVKLDLPE
GKMLGIIGPN GAGKSSLLRC LYRFLTPSSG EIQLFGQPIA SLSARAFARE VAVVLQDTPQ
HFDMTTAQLV ALGLTPHKAA FSMTTKADRL AVSQALETVG LKERAGQTYA SLSGGEKQRA
LIARAIAQQP KLLILDEPTN HLDIRYQIQI LELLKALGVT VVISIHDLNL ASALCDQLLL
LDQGKAVAQG SPKQVLSEAQ IARVFCVCCQ VSPHPQHGNP QINYFYGYHL HNADQSAQHG
SSSGSANGLA DQPFEAKEAN HDER
|
|---|
| |